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Title: A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament

Authors:
 [1];  [1];  [2];  [3];  [1]
  1. Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington KY USA
  2. Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston MA USA
  3. Department of Molecular and Cellular Biochemistry, University of Kentucky, Lexington KY USA
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Org.:
UNIVERSITYNIH
OSTI Identifier:
1466053
Resource Type:
Journal Article
Journal Name:
Federation of European Biochemical Societies (FEBS) Journal
Additional Journal Information:
Journal Volume: 285; Journal Issue: 15; Journal ID: ISSN 1742-464X
Publisher:
Federation of European Biochemical Societies
Country of Publication:
United States
Language:
ENGLISH

Citation Formats

Pang, Allan H., Obiero, Josiah M., Kulczyk, Arkadiusz W., Sviripa, Vitaliy M., and Tsodikov, Oleg V. A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament. United States: N. p., 2018. Web. doi:10.1111/febs.14585.
Pang, Allan H., Obiero, Josiah M., Kulczyk, Arkadiusz W., Sviripa, Vitaliy M., & Tsodikov, Oleg V. A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament. United States. doi:10.1111/febs.14585.
Pang, Allan H., Obiero, Josiah M., Kulczyk, Arkadiusz W., Sviripa, Vitaliy M., and Tsodikov, Oleg V. Mon . "A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament". United States. doi:10.1111/febs.14585.
@article{osti_1466053,
title = {A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament},
author = {Pang, Allan H. and Obiero, Josiah M. and Kulczyk, Arkadiusz W. and Sviripa, Vitaliy M. and Tsodikov, Oleg V.},
abstractNote = {},
doi = {10.1111/febs.14585},
journal = {Federation of European Biochemical Societies (FEBS) Journal},
issn = {1742-464X},
number = 15,
volume = 285,
place = {United States},
year = {2018},
month = {6}
}

Works referenced in this record:

Effect of cations and temperature on kinetics of desmin assembly
journal, August 1987

  • Stromer, M. H.; Ritter, M. A.; Pang, Y. Y.
  • Biochemical Journal, Vol. 246, Issue 1
  • DOI: 10.1042/bj2460075

Atomic structure of the vimentin central  -helical domain and its implications for intermediate filament assembly
journal, August 2012

  • Chernyatina, A. A.; Nicolet, S.; Aebi, U.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 34
  • DOI: 10.1073/pnas.1206836109

Intermediate filament structure: the bottom-up approach
journal, February 2015

  • Chernyatina, Anastasia A.; Guzenko, Dmytro; Strelkov, Sergei V.
  • Current Opinion in Cell Biology, Vol. 32
  • DOI: 10.1016/j.ceb.2014.12.007

Vimentin affects the mobility and invasiveness of prostate cancer cells
journal, July 2008

  • Zhao, Yan; Yan, Quanmei; Long, Xing
  • Cell Biochemistry and Function, Vol. 26, Issue 5
  • DOI: 10.1002/cbf.1478

Aberrant Vimentin Methylation Is Characteristic of Upper Gastrointestinal Pathologies
journal, February 2012


Vimentin Coil 1A—A Molecular Switch Involved in the Initiation of Filament Elongation
journal, July 2009

  • Meier, Markus; Padilla, G. Pauline; Herrmann, Harald
  • Journal of Molecular Biology, Vol. 390, Issue 2
  • DOI: 10.1016/j.jmb.2009.04.067

Real-time Observation of Coiled-coil Domains and Subunit Assembly in Intermediate Filaments
journal, July 2002

  • Hess, John F.; Voss, John C.; FitzGerald, Paul G.
  • Journal of Biological Chemistry, Vol. 277, Issue 38
  • DOI: 10.1074/jbc.M206500200

Overview of the CCP 4 suite and current developments
journal, March 2011

  • Winn, Martyn D.; Ballard, Charles C.; Cowtan, Kevin D.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
  • DOI: 10.1107/S0907444910045749

Keratin Intermediate Filament Structure
journal, March 1993

  • Steinert, Peter M.; Marekov, Lyuben N.; Fraser, R. D. Bruce
  • Journal of Molecular Biology, Vol. 230, Issue 2
  • DOI: 10.1006/jmbi.1993.1161

Arylquins target vimentin to trigger Par-4 secretion for tumor cell apoptosis
journal, September 2014

  • Burikhanov, Ravshan; Sviripa, Vitaliy M.; Hebbar, Nikhil
  • Nature Chemical Biology, Vol. 10, Issue 11
  • DOI: 10.1038/nchembio.1631

Deconstructing the Late Phase of Vimentin Assembly by Total Internal Reflection Fluorescence Microscopy (TIRFM)
journal, April 2011


MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009

  • Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
  • DOI: 10.1107/S0907444909042073

Atomic structure of vimentin coil 2
journal, May 2010

  • Nicolet, Stefan; Herrmann, Harald; Aebi, Ueli
  • Journal of Structural Biology, Vol. 170, Issue 2
  • DOI: 10.1016/j.jsb.2010.02.012

Coot model-building tools for molecular graphics
journal, November 2004

  • Emsley, Paul; Cowtan, Kevin
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
  • DOI: 10.1107/S0907444904019158

Conserved segments 1A and 2B of the intermediate filament dimer: their atomic structures and role in filament assembly
journal, March 2002

  • Strelkov, Sergei V.; Herrmann, Harald; Geisler, Norbert
  • The EMBO Journal, Vol. 21, Issue 6
  • DOI: 10.1093/emboj/21.6.1255

REFMAC 5 for the refinement of macromolecular crystal structures
journal, March 2011

  • Murshudov, Garib N.; Skubák, Pavol; Lebedev, Andrey A.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
  • DOI: 10.1107/S0907444911001314

The Structure of Vimentin Linker 1 and Rod 1B Domains Characterized by Site-directed Spin-labeling Electron Paramagnetic Resonance (SDSL-EPR) and X-ray Crystallography
journal, June 2012

  • Aziz, Atya; Hess, John F.; Budamagunta, Madhu S.
  • Journal of Biological Chemistry, Vol. 287, Issue 34
  • DOI: 10.1074/jbc.M111.334011

PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010

  • Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
  • DOI: 10.1107/S0907444909052925

Stabilization of vimentin coil2 fragment via an engineered disulfide
journal, January 2012


Near-UV Circular Dichroism Reveals Structural Transitions of Vimentin Subunits during Intermediate Filament Assembly
journal, February 2009

  • Georgakopoulou, Sofia; Möller, Dorothee; Sachs, Nadine
  • Journal of Molecular Biology, Vol. 386, Issue 2
  • DOI: 10.1016/j.jmb.2008.12.053

Structure and Assembly Properties of the Intermediate Filament Protein Vimentin: The Role of its Head, Rod and Tail Domains
journal, December 1996

  • Herrmann, Harald; Häner, Markus; Brettel, Monika
  • Journal of Molecular Biology, Vol. 264, Issue 5
  • DOI: 10.1006/jmbi.1996.0688

Detection in Fecal DNA of Colon Cancer–Specific Methylation of the Nonexpressed Vimentin Gene
journal, August 2005

  • Chen, Wei-Dong; Han, Z. James; Skoletsky, Joel
  • JNCI: Journal of the National Cancer Institute, Vol. 97, Issue 15
  • DOI: 10.1093/jnci/dji204

Intermediate filaments: from cell architecture to nanomechanics
journal, July 2007

  • Herrmann, Harald; Bär, Harald; Kreplak, Laurent
  • Nature Reviews Molecular Cell Biology, Vol. 8, Issue 7
  • DOI: 10.1038/nrm2197

Monitoring intermediate filament assembly by small-angle x-ray scattering reveals the molecular architecture of assembly intermediates
journal, October 2006

  • Sokolova, A. V.; Kreplak, L.; Wedig, T.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 44
  • DOI: 10.1073/pnas.0603629103

Characterization of distinct early assembly units of different intermediate filament proteins 1 1Edited by W. Baumeister
journal, March 1999

  • Herrmann, Harald; Häner, Markus; Brettel, Monika
  • Journal of Molecular Biology, Vol. 286, Issue 5
  • DOI: 10.1006/jmbi.1999.2528

A Quantitative Kinetic Model for the in Vitro Assembly of Intermediate Filaments from Tetrameric Vimentin
journal, April 2007

  • Kirmse, Robert; Portet, Stephanie; Mücke, Norbert
  • Journal of Biological Chemistry, Vol. 282, Issue 25
  • DOI: 10.1074/jbc.M701063200

Par-4 secretion: stoichiometry of 3-arylquinoline binding to vimentin
journal, January 2016

  • Sviripa, Vitaliy M.; Burikhanov, Ravshan; Obiero, Josiah M.
  • Organic & Biomolecular Chemistry, Vol. 14, Issue 1
  • DOI: 10.1039/C5OB01980J

Molecular replacement with MOLREP
journal, December 2009

  • Vagin, Alexei; Teplyakov, Alexei
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
  • DOI: 10.1107/S0907444909042589

Structural Basis for Dimerization and DNA Binding of Transcription Factor FLI1
journal, December 2015


Characterization of the in vitro co-assembly process of the intermediate filament proteins vimentin and desmin: mixed polymers at all stages of assembly
journal, March 2005

  • Wickert, Ute; Mücke, Norbert; Wedig, Tatjana
  • European Journal of Cell Biology, Vol. 84, Issue 2-3
  • DOI: 10.1016/j.ejcb.2005.01.004

Molecular and Cellular Biology of Intermediate Filaments
journal, June 1988


Scaling and assessment of data quality
journal, December 2005

  • Evans, Philip
  • Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 1, p. 72-82
  • DOI: 10.1107/S0907444905036693

Molecular and Biophysical Characterization of Assembly-Starter Units of Human Vimentin
journal, June 2004

  • Mücke, Norbert; Wedig, Tatjana; Bürer, Andrea
  • Journal of Molecular Biology, Vol. 340, Issue 1
  • DOI: 10.1016/j.jmb.2004.04.039

CNS stem cells express a new class of intermediate filament protein
journal, February 1990


Association of Vimentin overexpression and hepatocellular carcinoma metastasis
journal, January 2004


Oral administration of withaferin A inhibits carcinogenesis of prostate in TRAMP model
journal, July 2016


The integration of macromolecular diffraction data
journal, December 2005

  • Leslie, Andrew G. W.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 62, Issue 1
  • DOI: 10.1107/S0907444905039107

Identification of a nonapeptide motif in the vimentin head domain involved in intermediate filament assembly
journal, February 1992