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Title: Xi-cam : a versatile interface for data visualization and analysis

Abstract

Xi-camis an extensible platform for data management, analysis and visualization.Xi-camaims to provide a flexible and extensible approach to synchrotron data treatment as a solution to rising demands for high-volume/high-throughput processing pipelines. The core ofXi-camis an extensible plugin-based graphical user interface platform which provides users with an interactive interface to processing algorithms. Plugins are available for SAXS/WAXS/GISAXS/GIWAXS, tomography and NEXAFS data. WithXi-cam's `advanced' mode, data processing steps are designed as a graph-based workflow, which can be executed live, locally or remotely. Remote execution utilizes high-performance computing or de-localized resources, allowing for the effective reduction of high-throughput data.Xi-cam's plugin-based architecture targets cross-facility and cross-technique collaborative development, in support of multi-modal analysis.Xi-camis open-source and cross-platform, and available for download on GitHub.

Authors:
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Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States)
Sponsoring Org.:
USDOE Office of Science - Office of Advanced Scientific Computing Research; USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1465774
DOE Contract Number:  
AC02-06CH11357
Resource Type:
Journal Article
Journal Name:
Journal of Synchrotron Radiation (Online)
Additional Journal Information:
Journal Volume: 25; Journal Issue: 4; Journal ID: ISSN 1600-5775
Publisher:
International Union of Crystallography
Country of Publication:
United States
Language:
English

Citation Formats

Pandolfi, Ronald J., Allan, Daniel B., Arenholz, Elke, Barroso-Luque, Luis, Campbell, Stuart I., Caswell, Thomas A., Blair, Austin, De Carlo, Francesco, Fackler, Sean, Fournier, Amanda P., Freychet, Guillaume, Fukuto, Masafumi, Gürsoy, Dogˇa, Jiang, Zhang, Krishnan, Harinarayan, Kumar, Dinesh, Kline, R. Joseph, Li, Ruipeng, Liman, Christopher, Marchesini, Stefano, Mehta, Apurva, N'Diaye, Alpha T., Parkinson, Dilworth Y., Parks, Holden, Pellouchoud, Lenson A., Perciano, Talita, Ren, Fang, Sahoo, Shreya, Strzalka, Joseph, Sunday, Daniel, Tassone, Christopher J., Ushizima, Daniela, Venkatakrishnan, Singanallur, Yager, Kevin G., Zwart, Peter, Sethian, James A., and Hexemer, Alexander. Xi-cam : a versatile interface for data visualization and analysis. United States: N. p., 2018. Web. doi:10.1107/S1600577518005787.
Pandolfi, Ronald J., Allan, Daniel B., Arenholz, Elke, Barroso-Luque, Luis, Campbell, Stuart I., Caswell, Thomas A., Blair, Austin, De Carlo, Francesco, Fackler, Sean, Fournier, Amanda P., Freychet, Guillaume, Fukuto, Masafumi, Gürsoy, Dogˇa, Jiang, Zhang, Krishnan, Harinarayan, Kumar, Dinesh, Kline, R. Joseph, Li, Ruipeng, Liman, Christopher, Marchesini, Stefano, Mehta, Apurva, N'Diaye, Alpha T., Parkinson, Dilworth Y., Parks, Holden, Pellouchoud, Lenson A., Perciano, Talita, Ren, Fang, Sahoo, Shreya, Strzalka, Joseph, Sunday, Daniel, Tassone, Christopher J., Ushizima, Daniela, Venkatakrishnan, Singanallur, Yager, Kevin G., Zwart, Peter, Sethian, James A., & Hexemer, Alexander. Xi-cam : a versatile interface for data visualization and analysis. United States. https://doi.org/10.1107/S1600577518005787
Pandolfi, Ronald J., Allan, Daniel B., Arenholz, Elke, Barroso-Luque, Luis, Campbell, Stuart I., Caswell, Thomas A., Blair, Austin, De Carlo, Francesco, Fackler, Sean, Fournier, Amanda P., Freychet, Guillaume, Fukuto, Masafumi, Gürsoy, Dogˇa, Jiang, Zhang, Krishnan, Harinarayan, Kumar, Dinesh, Kline, R. Joseph, Li, Ruipeng, Liman, Christopher, Marchesini, Stefano, Mehta, Apurva, N'Diaye, Alpha T., Parkinson, Dilworth Y., Parks, Holden, Pellouchoud, Lenson A., Perciano, Talita, Ren, Fang, Sahoo, Shreya, Strzalka, Joseph, Sunday, Daniel, Tassone, Christopher J., Ushizima, Daniela, Venkatakrishnan, Singanallur, Yager, Kevin G., Zwart, Peter, Sethian, James A., and Hexemer, Alexander. Thu . "Xi-cam : a versatile interface for data visualization and analysis". United States. https://doi.org/10.1107/S1600577518005787.
@article{osti_1465774,
title = {Xi-cam : a versatile interface for data visualization and analysis},
author = {Pandolfi, Ronald J. and Allan, Daniel B. and Arenholz, Elke and Barroso-Luque, Luis and Campbell, Stuart I. and Caswell, Thomas A. and Blair, Austin and De Carlo, Francesco and Fackler, Sean and Fournier, Amanda P. and Freychet, Guillaume and Fukuto, Masafumi and Gürsoy, Dogˇa and Jiang, Zhang and Krishnan, Harinarayan and Kumar, Dinesh and Kline, R. Joseph and Li, Ruipeng and Liman, Christopher and Marchesini, Stefano and Mehta, Apurva and N'Diaye, Alpha T. and Parkinson, Dilworth Y. and Parks, Holden and Pellouchoud, Lenson A. and Perciano, Talita and Ren, Fang and Sahoo, Shreya and Strzalka, Joseph and Sunday, Daniel and Tassone, Christopher J. and Ushizima, Daniela and Venkatakrishnan, Singanallur and Yager, Kevin G. and Zwart, Peter and Sethian, James A. and Hexemer, Alexander},
abstractNote = {Xi-camis an extensible platform for data management, analysis and visualization.Xi-camaims to provide a flexible and extensible approach to synchrotron data treatment as a solution to rising demands for high-volume/high-throughput processing pipelines. The core ofXi-camis an extensible plugin-based graphical user interface platform which provides users with an interactive interface to processing algorithms. Plugins are available for SAXS/WAXS/GISAXS/GIWAXS, tomography and NEXAFS data. WithXi-cam's `advanced' mode, data processing steps are designed as a graph-based workflow, which can be executed live, locally or remotely. Remote execution utilizes high-performance computing or de-localized resources, allowing for the effective reduction of high-throughput data.Xi-cam's plugin-based architecture targets cross-facility and cross-technique collaborative development, in support of multi-modal analysis.Xi-camis open-source and cross-platform, and available for download on GitHub.},
doi = {10.1107/S1600577518005787},
url = {https://www.osti.gov/biblio/1465774}, journal = {Journal of Synchrotron Radiation (Online)},
issn = {1600-5775},
number = 4,
volume = 25,
place = {United States},
year = {2018},
month = {5}
}

Works referenced in this record:

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journal, March 2015


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journal, November 2013


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journal, January 2015


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journal, April 2013


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journal, June 2010


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journal, March 2012


TomoPy: a framework for the analysis of synchrotron tomographic data
journal, August 2014


Periodic lattices of arbitrary nano-objects: modeling and applications for self-assembled systems
journal, December 2013


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journal, August 2009


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journal, August 2015


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journal, July 2016


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journal, June 2017


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journal, December 2016


A SAXS/WAXS/GISAXS Beamline with Multilayer Monochromator
journal, October 2010


Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data
journal, October 2014


Small angle x-ray scattering metrology for sidewall angle and cross section of nanometer scale line gratings
journal, August 2004


X-ray micro-tomography at the Advanced Light Source
conference, October 2012


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journal, May 2017


A new Guinier–Porod model
journal, May 2010


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FIT2D : a multi-purpose data reduction, analysis and visualization program
journal, March 2016


Integration of TomoPy and the ASTRA toolbox for advanced processing and reconstruction of tomographic synchrotron data
journal, April 2016


    Works referencing / citing this record:

    Synchrotron Big Data Science
    journal, September 2018


    Influence of morphology on electrochemical and capacity performance of open-porous structured electrodes
    journal, January 2020


    Real-time reconstruction and visualisation towards dynamic feedback control during time-resolved tomography experiments at TOMCAT
    journal, December 2019


    Oriented porous LLZO 3D structures obtained by freeze casting for battery applications
    journal, January 2019


    NiWO 4 nanoparticle decorated lignin as electrodes for asymmetric flexible supercapacitors
    journal, January 2020


    Bluesky's Ahead: A Multi-Facility Collaboration for an a la Carte Software Project for Data Acquisition and Management
    journal, May 2019