Quantitative Measurement of Naïve T Cell Association With Dendritic Cells, FRCs, and Blood Vessels in Lymph Nodes

Tasnim, Humayra; Fricke, G. Matthew; Byrum, Janie R.; Sotiris, Justyna O.; Cannon, Judy L.; Moses, Melanie E.

doi:10.3389/fimmu.2018.01571

Title: Quantitative Measurement of Naïve T Cell Association With Dendritic Cells, FRCs, and Blood Vessels in Lymph Nodes

Journal Article · Thu Jul 26 00:00:00 EDT 2018 · Frontiers in Immunology

DOI:https://doi.org/10.3389/fimmu.2018.01571· OSTI ID:1461704

Tasnim, Humayra; Fricke, G. Matthew; Byrum, Janie R.; Sotiris, Justyna O.; Cannon, Judy L.; Moses, Melanie E.

View Journal Article

Cite

Export

Save

Sponsoring Organization:: USDOE

OSTI ID:: 1461704

Journal Information:: Frontiers in Immunology, Journal Name: Frontiers in Immunology Vol. 9; ISSN 1664-3224

Publisher:: Frontiers Media SACopyright Statement

Country of Publication:: Switzerland

Language:: English

Citation Metrics:

Cited by: 24 works

Citation information provided by
Web of Science

References (51)

A Mathematical Theory of Communication Shannon, C. E. Bell System Technical Journal, Vol. 27, Issue 3 https://doi.org/10.1002/j.1538-7305.1948.tb01338.x	journal	July 1948
Organizer-Like Reticular Stromal Cell Layer Common to Adult Secondary Lymphoid Organs Katakai, Tomoya; Suto, Hidenori; Sugai, Manabu The Journal of Immunology, Vol. 181, Issue 9 https://doi.org/10.4049/jimmunol.181.9.6189	journal	October 2008
T-cell priming by dendritic cells in lymph nodes occurs in three distinct phases Mempel, Thorsten R.; Henrickson, Sarah E.; von Andrian, Ulrich H. Nature, Vol. 427, Issue 6970 https://doi.org/10.1038/nature02238	journal	January 2004
Fibroblastic reticular cell-derived lysophosphatidic acid regulates confined intranodal T-cell motility Takeda, Akira; Kobayashi, Daichi; Aoi, Keita eLife, Vol. 5 https://doi.org/10.7554/eLife.10561	journal	February 2016
Detecting Novel Associations in Large Data Sets Reshef, D. N.; Reshef, Y. A.; Finucane, H. K. Science, Vol. 334, Issue 6062 https://doi.org/10.1126/science.1205438	journal	December 2011
Systems biology approaches for understanding cellular mechanisms of immunity in lymph nodes during infection Mirsky, Henry P.; Miller, Mark J.; Linderman, Jennifer J. Journal of Theoretical Biology, Vol. 287 https://doi.org/10.1016/j.jtbi.2011.06.037	journal	October 2011
Multi-Image Colocalization and Its Statistical Significance Fletcher, Patrick A.; Scriven, David R. L.; Schulson, Meredith N. Biophysical Journal, Vol. 99, Issue 6 https://doi.org/10.1016/j.bpj.2010.07.006	journal	September 2010
CD8 + T Cells Orchestrate pDC-XCR1 + Dendritic Cell Spatial and Functional Cooperativity to Optimize Priming Brewitz, Anna; Eickhoff, Sarah; Dähling, Sabrina Immunity, Vol. 46, Issue 2 https://doi.org/10.1016/j.immuni.2017.01.003	journal	February 2017
A practical guide to evaluating colocalization in biological microscopy Dunn, Kenneth W.; Kamocka, Malgorzata M.; McDonald, John H. American Journal of Physiology-Cell Physiology, Vol. 300, Issue 4 https://doi.org/10.1152/ajpcell.00462.2010	journal	April 2011
Lymph node - an organ for T-cell activation and pathogen defense Gasteiger, Georg; Ataide, Marco; Kastenmüller, Wolfgang Immunological Reviews, Vol. 271, Issue 1 https://doi.org/10.1111/imr.12399	journal	April 2016
Quantifying colocalization by correlation: The Pearson correlation coefficient is superior to the Mander's overlap coefficient Adler, Jeremy; Parmryd, Ingela Cytometry Part A, Vol. 77A, Issue 8 https://doi.org/10.1002/cyto.a.20896	journal	March 2010
Bootstrap Methods for the Empirical Study of Decision-Making and Information Flows in Social Systems DeDeo, Simon; Hawkins, Robert; Klingenstein, Sara Entropy, Vol. 15, Issue 12 https://doi.org/10.3390/e15062246	journal	June 2013
Autonomous T cell trafficking examined in vivo with intravital two-photon microscopy Miller, M. J.; Wei, S. H.; Cahalan, M. D. Proceedings of the National Academy of Sciences, Vol. 100, Issue 5 https://doi.org/10.1073/pnas.2628040100	journal	February 2003
T-Cell Function and Migration — Two Sides of the Same Coin von Andrian, Ulrich H.; Mackay, Charles R. New England Journal of Medicine, Vol. 343, Issue 14 https://doi.org/10.1056/NEJM200010053431407	journal	October 2000
Fibroblastic reticular cells in lymph nodes regulate the homeostasis of naive T cells Link, Alexander; Vogt, Tobias K.; Favre, Stéphanie Nature Immunology, Vol. 8, Issue 11 https://doi.org/10.1038/ni1513	journal	September 2007
JIDT: An Information-Theoretic Toolkit for Studying the Dynamics of Complex Systems Lizier, Joseph T. Frontiers in Robotics and AI, Vol. 1 https://doi.org/10.3389/frobt.2014.00011	journal	December 2014
Bringing Statistics Up to Speed with Data in Analysis of Lymphocyte Motility Letendre, Kenneth; Donnadieu, Emmanuel; Moses, Melanie E. PLOS ONE, Vol. 10, Issue 5 https://doi.org/10.1371/journal.pone.0126333	journal	May 2015
ROCK regulates the intermittent mode of interstitial T cell migration in inflamed lungs Mrass, Paulus; Oruganti, Sreenivasa Rao; Fricke, G. Matthew Nature Communications, Vol. 8, Issue 1 https://doi.org/10.1038/s41467-017-01032-2	journal	October 2017
Colocalization Analysis in Fluorescence Micrographs: Verification of a More Accurate Calculation of Pearson's Correlation Coefficient Barlow, Andrew L.; MacLeod, Alasdair; Noppen, Samuel Microscopy and Microanalysis, Vol. 16, Issue 6 https://doi.org/10.1017/S143192761009389X	journal	October 2010
The Reticular Cell Network: A Robust Backbone for Immune Responses Textor, Johannes; Mandl, Judith N.; de Boer, Rob J. PLOS Biology, Vol. 14, Issue 10 https://doi.org/10.1371/journal.pbio.2000827	journal	October 2016
A novel reticular stromal structure in lymph node cortex: an immuno-platform for interactions among dendritic cells, T cells and B cells Katakai, T. International Immunology, Vol. 16, Issue 8 https://doi.org/10.1093/intimm/dxh113	journal	June 2004
T cell and reticular network co-dependence in HIV infection Donovan, Graham M.; Lythe, Grant Journal of Theoretical Biology, Vol. 395 https://doi.org/10.1016/j.jtbi.2016.01.040	journal	April 2016
Variations of Box Plots Mcgill, Robert; Tukey, John W.; Larsen, Wayne A. The American Statistician, Vol. 32, Issue 1 https://doi.org/10.1080/00031305.1978.10479236	journal	February 1978
Heterogeneous CD8+ T Cell Migration in the Lymph Node in the Absence of Inflammation Revealed by Quantitative Migration Analysis Banigan, Edward J.; Harris, Tajie H.; Christian, David A. PLOS Computational Biology, Vol. 11, Issue 2 https://doi.org/10.1371/journal.pcbi.1004058	journal	February 2015
Lymph-Borne Chemokines and Other Low Molecular Weight Molecules Reach High Endothelial Venules via Specialized Conduits While a Functional Barrier Limits Access to the Lymphocyte Microenvironments in Lymph Node Cortex Gretz, J. Elizabeth; Norbury, Christopher C.; Anderson, Arthur O. The Journal of Experimental Medicine, Vol. 192, Issue 10 https://doi.org/10.1084/jem.192.10.1425	journal	November 2000
Naive, Effector, and Memory T Lymphocytes Efficiently Scan Dendritic Cells In Vivo: Contact Frequency in T Cell Zones of Secondary Lymphoid Organs Does Not Depend on LFA-1 Expression and Facilitates Survival of Effector T Cells Westermann, Jürgen; Bode, Ulrike; Sahle, Andrea The Journal of Immunology, Vol. 174, Issue 5 https://doi.org/10.4049/jimmunol.174.5.2517	journal	February 2005
Lymphoid Tissue Damage in HIV-1 Infection Depletes Naïve T Cells and Limits T Cell Reconstitution after Antiretroviral Therapy Zeng, Ming; Southern, Peter J.; Reilly, Cavan S. PLoS Pathogens, Vol. 8, Issue 1 https://doi.org/10.1371/journal.ppat.1002437	journal	January 2012
CCR7 ligands control basal T cell motility within lymph node slices in a phosphoinositide 3–kinase– independent manner Asperti-Boursin, François; Real, Eliana; Bismuth, Georges The Journal of Experimental Medicine, Vol. 204, Issue 5 https://doi.org/10.1084/jem.20062079	journal	May 2007
The T cell receptor resides in ordered plasma membrane nanodomains that aggregate upon patching of the receptor Dinic, Jelena; Riehl, Astrid; Adler, Jeremy Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep10082	journal	May 2015
The Strategy of T Cell Antigen-presenting Cell Encounter in Antigen-draining Lymph Nodes Revealed by Imaging of Initial T Cell Activation Bajénoff, Marc; Granjeaud, Samuel; Guerder, Sylvie The Journal of Experimental Medicine, Vol. 198, Issue 5 https://doi.org/10.1084/jem.20030167	journal	September 2003
Handbook of Biological Confocal Microscopy, Third Edition Pawley, James B.; Masters, Barry R. Journal of Biomedical Optics, Vol. 13, Issue 2 https://doi.org/10.1117/1.2911629	journal	January 2008
T cell migration, search strategies and mechanisms Krummel, Matthew F.; Bartumeus, Frederic; Gérard, Audrey Nature Reviews Immunology, Vol. 16, Issue 3 https://doi.org/10.1038/nri.2015.16	journal	February 2016
The Cc Chemokine Thymus-Derived Chemotactic Agent 4 (Tca-4, Secondary Lymphoid Tissue Chemokine, 6ckine, Exodus-2) Triggers Lymphocyte Function–Associated Antigen 1–Mediated Arrest of Rolling T Lymphocytes in Peripheral Lymph Node High Endothelial Venules Stein, Jens V.; Rot, Antal; Luo, Yi The Journal of Experimental Medicine, Vol. 191, Issue 1 https://doi.org/10.1084/jem.191.1.61	journal	January 2000
Persistence and Adaptation in Immunity: T Cells Balance the Extent and Thoroughness of Search Fricke, G. Matthew; Letendre, Kenneth A.; Moses, Melanie E. PLOS Computational Biology, Vol. 12, Issue 3 https://doi.org/10.1371/journal.pcbi.1004818	journal	March 2016
CXCR3 Chemokine Receptor-Ligand Interactions in the Lymph Node Optimize CD4+ T Helper 1 Cell Differentiation Groom, Joanna R.; Richmond, Jillian; Murooka, Thomas T. Immunity, Vol. 37, Issue 6 https://doi.org/10.1016/j.immuni.2012.08.016	journal	December 2012
Robust control of the adaptive immune system Wong, Harikesh S.; Germain, Ronald N. Seminars in Immunology, Vol. 36 https://doi.org/10.1016/j.smim.2017.12.009	journal	April 2018
A mutual information approach to calculating nonlinearity: Measuring nonlinearity with mutual information Smith, Reginald Stat, Vol. 4, Issue 1 https://doi.org/10.1002/sta4.96	journal	February 2015
Chemokine control of lymphocyte trafficking: a general overview Stein, Jens V.; Nombela-Arrieta, Cesar Immunology, Vol. 116, Issue 1 https://doi.org/10.1111/j.1365-2567.2005.02183.x	journal	September 2005
Visualizing dendritic cell networks in vivo Lindquist, Randall L.; Shakhar, Guy; Dudziak, Diana Nature Immunology, Vol. 5, Issue 12 https://doi.org/10.1038/ni1139	journal	November 2004
Inflammatory Chemokine Transport and Presentation in HEV: A Remote Control Mechanism for Monocyte Recruitment to Lymph Nodes in Inflamed Tissues Palframan, Roger T.; Jung, Steffen; Cheng, Guiying The Journal of Experimental Medicine, Vol. 194, Issue 9 https://doi.org/10.1084/jem.194.9.1361	journal	November 2001
The Conduit System Transports Soluble Antigens from the Afferent Lymph to Resident Dendritic Cells in the T Cell Area of the Lymph Node Sixt, Michael; Kanazawa, Nobuo; Selg, Manuel Immunity, Vol. 22, Issue 1 https://doi.org/10.1016/j.immuni.2004.11.013	journal	January 2005
Chemokine-guided cell positioning in the lymph node orchestrates the generation of adaptive immune responses Lian, Jeffrey; Luster, Andrew D. Current Opinion in Cell Biology, Vol. 36 https://doi.org/10.1016/j.ceb.2015.05.003	journal	October 2015
Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality Novkovic, Mario; Onder, Lucas; Cupovic, Jovana PLOS Biology, Vol. 14, Issue 7 https://doi.org/10.1371/journal.pbio.1002515	journal	July 2016
An information-theoretic primer on complexity, self-organization, and emergence Prokopenko, Mikhail; Boschetti, Fabio; Ryan, Alex J. Complexity, Vol. 15, Issue 1 https://doi.org/10.1002/cplx.20249	journal	September 2009
Strategically Localized Dendritic Cells Promote Rapid T Cell Responses to Lymph-Borne Particulate Antigens Gerner, Michael Y.; Torabi-Parizi, Parizad; Germain, Ronald N. Immunity, Vol. 42, Issue 1 https://doi.org/10.1016/j.immuni.2014.12.024	journal	January 2015
Stromal Cell Networks Regulate Lymphocyte Entry, Migration, and Territoriality in Lymph Nodes Bajénoff, Marc; Egen, Jackson G.; Koo, Lily Y. Immunity, Vol. 25, Issue 6 https://doi.org/10.1016/j.immuni.2006.10.011	journal	December 2006
Microenvironmental Control of High-Speed Interstitial T Cell Migration in the Lymph Node Katakai, Tomoya; Kinashi, Tatsuo Frontiers in Immunology, Vol. 7 https://doi.org/10.3389/fimmu.2016.00194	journal	May 2016
HEVs, lymphatics and homeostatic immune cell trafficking in lymph nodes Girard, Jean-Philippe; Moussion, Christine; Förster, Reinhold Nature Reviews Immunology, Vol. 12, Issue 11 https://doi.org/10.1038/nri3298	journal	September 2012
Alignment by Maximization of Mutual Information Viola, Paul; Wells III, William M. International Journal of Computer Vision, Vol. 24, Issue 2, p. 137-154 https://doi.org/10.1023/A:1007958904918	journal	September 1997
The Ccr7 Ligand ELC (Ccl19) Is Transcytosed in High Endothelial Venules and Mediates T Cell Recruitment Baekkevold, Espen S.; Yamanaka, Takeshi; Palframan, Roger T. The Journal of Experimental Medicine, Vol. 193, Issue 9 https://doi.org/10.1084/jem.193.9.1105	journal	May 2001
Chemokines enhance immunity by guiding naive CD8+ T cells to sites of CD4+ T cell–dendritic cell interaction Castellino, Flora; Huang, Alex Y.; Altan-Bonnet, Grégoire Nature, Vol. 440, Issue 7086 https://doi.org/10.1038/nature04651	journal	April 2006

Similar Records

Lack of TAK1 in dendritic cells inhibits the contact hypersensitivity response induced by trichloroethylene in local lymph node assay

Journal Article · Thu Sep 15 00:00:00 EDT 2016 · Toxicology and Applied Pharmacology · OSTI ID:1461704

Yao, Pan; Hongqian, Chu; Qinghe, Meng; +5 more

CHANGES IN CELL POPULATION OF THYMUS, LYMPH NODES, AND BLOOD AFTER X- IRRADIATION.

Journal Article · Mon Jan 01 00:00:00 EST 1968 · Nippon Igaku Hoshasen Gakkai Zasshi, 27: 1529-36(Mar. 1968). · OSTI ID:1461704

Sato, C

EFFECT OF PHYTOHEMAGGLUTININ-M (PHA) ON THE SPLEEN-COLONY-FORMING CAPACITY OF MOUSE LYMPH NODE AND BLOOD CELLS.

Journal Article · Sat Jan 01 00:00:00 EST 1966 · Transplantation, 4: 732-41(Nov. 1966). · OSTI ID:1461704

Micklem, H S

Title: Quantitative Measurement of Naïve T Cell Association With Dendritic Cells, FRCs, and Blood Vessels in Lymph Nodes

Citation Formats

References (51)

Similar Records

Related Subjects