Influence of isopropylmalate synthase Os IPMS 1 on seed vigour associated with amino acid and energy metabolism in rice
Abstract
Summary Seed vigour is an imperative trait for the direct seeding of rice. Isopropylmalate synthase ( IPMS ) catalyses the committed step of leucine (Leu) biosynthesis, but its effect on seed vigour remains unclear. In this study, rice Os IPMS 1 and Os IPMS 2 was cloned, and the roles of Os IPMS 1 in seed vigour were mainly investigated. Os IPMS 1 and Os IPMS 2 catalyse Leu biosynthesis, and Leu feedback inhibits their IPMS activities. Disruption of Os IPMS 1 resulted in low seed vigour under various conditions, which might be tightly associated with the reduction of amino acids in germinating seeds. Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid ( TCA ) cycle were significantly reduced in osipms1 mutants compared with those in wide type ( WT ) during seed germination. Transcriptome analysis indicated that a total of 1209 differentially expressed genes ( DEG s) were altered in osipms1a mutant compared with WT at the early germination stage, wherein most of the genes were involved in glycolysis/gluconeogenesis, protein processing, pyruvate, carbon, fructose and mannose metabolism. Further analysis confirmed that the regulation of Os IPMS 1 in seed vigour involved in starch hydrolysis,more »
- Authors:
-
- The Laboratory of Seed Science and Technology State Key Laboratory of Crop Genetics and Germplasm Enhancement Jiangsu Collaborative Innovation Center for Modern Crop Production Nanjing Agricultural University Nanjing China
- The Laboratory of Seed Science and Technology State Key Laboratory of Crop Genetics and Germplasm Enhancement Jiangsu Collaborative Innovation Center for Modern Crop Production Nanjing Agricultural University Nanjing China, The Laboratory of Seed Science and Technology Guangdong Key Laboratory of Plant Molecular Breeding State Key Laboratory for Conservation and Utilization of Subtropical Agro‐Bioresources South China Agricultural University Guangzhou China
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1460467
- Alternate Identifier(s):
- OSTI ID: 1460468
- Resource Type:
- Journal Article: Published Article
- Journal Name:
- Plant Biotechnology Journal
- Additional Journal Information:
- Journal Name: Plant Biotechnology Journal Journal Volume: 17 Journal Issue: 2; Journal ID: ISSN 1467-7644
- Publisher:
- Wiley-Blackwell
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
He, Yongqi, Cheng, Jinping, He, Ying, Yang, Bin, Cheng, Yanhao, Yang, Can, Zhang, Hongsheng, and Wang, Zhoufei. Influence of isopropylmalate synthase Os IPMS 1 on seed vigour associated with amino acid and energy metabolism in rice. United Kingdom: N. p., 2018.
Web. doi:10.1111/pbi.12979.
He, Yongqi, Cheng, Jinping, He, Ying, Yang, Bin, Cheng, Yanhao, Yang, Can, Zhang, Hongsheng, & Wang, Zhoufei. Influence of isopropylmalate synthase Os IPMS 1 on seed vigour associated with amino acid and energy metabolism in rice. United Kingdom. https://doi.org/10.1111/pbi.12979
He, Yongqi, Cheng, Jinping, He, Ying, Yang, Bin, Cheng, Yanhao, Yang, Can, Zhang, Hongsheng, and Wang, Zhoufei. 2018.
"Influence of isopropylmalate synthase Os IPMS 1 on seed vigour associated with amino acid and energy metabolism in rice". United Kingdom. https://doi.org/10.1111/pbi.12979.
@article{osti_1460467,
title = {Influence of isopropylmalate synthase Os IPMS 1 on seed vigour associated with amino acid and energy metabolism in rice},
author = {He, Yongqi and Cheng, Jinping and He, Ying and Yang, Bin and Cheng, Yanhao and Yang, Can and Zhang, Hongsheng and Wang, Zhoufei},
abstractNote = {Summary Seed vigour is an imperative trait for the direct seeding of rice. Isopropylmalate synthase ( IPMS ) catalyses the committed step of leucine (Leu) biosynthesis, but its effect on seed vigour remains unclear. In this study, rice Os IPMS 1 and Os IPMS 2 was cloned, and the roles of Os IPMS 1 in seed vigour were mainly investigated. Os IPMS 1 and Os IPMS 2 catalyse Leu biosynthesis, and Leu feedback inhibits their IPMS activities. Disruption of Os IPMS 1 resulted in low seed vigour under various conditions, which might be tightly associated with the reduction of amino acids in germinating seeds. Eleven amino acids that associated with stress tolerance, GA biosynthesis and tricarboxylic acid ( TCA ) cycle were significantly reduced in osipms1 mutants compared with those in wide type ( WT ) during seed germination. Transcriptome analysis indicated that a total of 1209 differentially expressed genes ( DEG s) were altered in osipms1a mutant compared with WT at the early germination stage, wherein most of the genes were involved in glycolysis/gluconeogenesis, protein processing, pyruvate, carbon, fructose and mannose metabolism. Further analysis confirmed that the regulation of Os IPMS 1 in seed vigour involved in starch hydrolysis, glycolytic activity and energy levels in germinating seeds. The effects of seed priming were tightly associated with the mRNA levels of Os IPMS 1 in priming seeds. The Os IPMS 1 might be used as a biomarker to determine the best stop time‐point of seed priming in rice. This study provides novel insights into the function of Os IPMS 1 on seed vigour and should have practical applications in seed priming of rice.},
doi = {10.1111/pbi.12979},
url = {https://www.osti.gov/biblio/1460467},
journal = {Plant Biotechnology Journal},
issn = {1467-7644},
number = 2,
volume = 17,
place = {United Kingdom},
year = {Mon Jul 16 00:00:00 EDT 2018},
month = {Mon Jul 16 00:00:00 EDT 2018}
}
Web of Science
Works referenced in this record:
Dihydroxyacid dehydratase is important for gametophyte development and disruption causes increased susceptibility to salinity stress in Arabidopsis
journal, November 2014
- Zhang, Chun; Pang, Qiuying; Jiang, Luguang
- Journal of Experimental Botany, Vol. 66, Issue 3
Common QTL Affect the Rate of Tomato Seed Germination under Different Stress and Nonstress Conditions
journal, January 2007
- Foolad, Majid R.; Subbiah, Prakash; Zhang, Liping
- International Journal of Plant Genomics, Vol. 2007
Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria
journal, May 2010
- Araújo, Wagner L.; Ishizaki, Kimitsune; Nunes-Nesi, Adriano
- The Plant Cell, Vol. 22, Issue 5
Mapping quantitative trait loci controlling seed longevity in rice (Oryza sativa L.)
journal, May 2002
- Miura, K.; Lin, S.; Yano, M.
- Theoretical and Applied Genetics, Vol. 104, Issue 6
Mapping of quantitative trait loci controlling low-temperature germinability in rice (Oryza sativa L.)
journal, November 2003
- Fujino, K.; Sekiguchi, H.; Sato, T.
- Theoretical and Applied Genetics, Vol. 108, Issue 5
Abscisic acid and the control of seed dormancy and germination
journal, February 2010
- Nambara, Eiji; Okamoto, Masanori; Tatematsu, Kiyoshi
- Seed Science Research, Vol. 20, Issue 2
Two Arabidopsis Genes ( IPMS1 and IPMS2 ) Encode Isopropylmalate Synthase, the Branchpoint Step in the Biosynthesis of Leucine
journal, December 2006
- de Kraker, Jan-Willem; Luck, Katrin; Textor, Susanne
- Plant Physiology, Vol. 143, Issue 2
Inductive effect produced by a mixture of carbon source in the production of gibberellic acid by Gibberella fujikuroi
journal, November 2010
- Rios-Iribe, Erika Y.; Flores-Cotera, Luis B.; Chávira, Mario M. González
- World Journal of Microbiology and Biotechnology, Vol. 27, Issue 6
Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination
journal, July 2008
- Holdsworth, Michael J.; Bentsink, Leónie; Soppe, Wim J. J.
- New Phytologist, Vol. 179, Issue 1
3-Methylcrotonyl-Coenzyme A Carboxylase Is a Component of the Mitochondrial Leucine Catabolic Pathway in Plants
journal, December 1998
- Anderson, Marc D.; Che, Ping; Song, Jianping
- Plant Physiology, Vol. 118, Issue 4
Identification of genes involved in rice seed priming in the early imbibition stage
journal, March 2016
- Cheng, J.; Wang, L.; Zeng, P.
- Plant Biology, Vol. 19, Issue 1
Quantitative trait loci analysis for rice seed vigor during the germination stage
journal, December 2010
- Wang, Zhou-fei; Wang, Jian-fei; Bao, Yong-mei
- Journal of Zhejiang University SCIENCE B, Vol. 11, Issue 12
qLTG-9, a stable quantitative trait locus for low-temperature germination in rice (Oryza sativa L.)
journal, June 2013
- Li, Linfang; Liu, Xi; Xie, Kun
- Theoretical and Applied Genetics, Vol. 126, Issue 9
Arabidopsis Seed Development and Germination Is Associated with Temporally Distinct Metabolic Switches
journal, September 2006
- Fait, Aaron; Angelovici, Ruthie; Less, Hadar
- Plant Physiology, Vol. 142, Issue 3
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
journal, January 2013
- Kim, Daehwan; Pertea, Geo; Trapnell, Cole
- Genome Biology, Vol. 14, Issue 4
In-Depth Proteomic Analysis of Rice Embryo Reveals its Important Roles in Seed Germination
journal, September 2014
- Han, Chao; He, Dongli; Li, Ming
- Plant and Cell Physiology, Vol. 55, Issue 10
Developing Rice Embryo Proteomics Reveals Essential Role for Embryonic Proteins in Regulation of Seed Germination
journal, July 2009
- Kim, Sun Tae; Wang, Yiming; Kang, Sun Young
- Journal of Proteome Research, Vol. 8, Issue 7
Seed priming: state of the art and new perspectives
journal, March 2015
- Paparella, S.; Araújo, S. S.; Rossi, G.
- Plant Cell Reports, Vol. 34, Issue 8
Seed imbibition in Medicago truncatula Gaertn.: Expression profiles of DNA repair genes in relation to PEG-mediated stress
journal, May 2011
- Balestrazzi, Alma; Confalonieri, Massimo; Macovei, Anca
- Journal of Plant Physiology, Vol. 168, Issue 7
Silicon improves seed germination and alleviates drought stress in lentil crops by regulating osmolytes, hydrolytic enzymes and antioxidant defense system
journal, October 2017
- Biju, Sajitha; Fuentes, Sigfredo; Gupta, Dorin
- Plant Physiology and Biochemistry, Vol. 119
Proteomic Analysis Reveals Proteins Involved in Seed Imbibition under Salt Stress in Rice
journal, January 2017
- Xu, Enshun; Chen, Mingming; He, Hui
- Frontiers in Plant Science, Vol. 7
From Amino Acid to Glucosinolate Biosynthesis: Protein Sequence Changes in the Evolution of Methylthioalkylmalate Synthase in Arabidopsis
journal, January 2011
- de Kraker, Jan-Willem; Gershenzon, Jonathan
- The Plant Cell, Vol. 23, Issue 1
Analysis of embryonic proteome modulation by GA and ABA from germinating rice seeds
journal, September 2008
- Kim, Sun Tae; Kang, Sun Young; Wang, Yiming
- PROTEOMICS, Vol. 8, Issue 17
The multifaceted role of aspartate-family amino acids in plant metabolism
journal, April 2012
- Kirma, M.; Araujo, W. L.; Fernie, A. R.
- Journal of Experimental Botany, Vol. 63, Issue 14
A Flux Model of Glycolysis and the Oxidative Pentosephosphate Pathway in Developing Brassica napus Embryos
journal, May 2003
- Schwender, Jörg; Ohlrogge, John B.; Shachar-Hill, Yair
- Journal of Biological Chemistry, Vol. 278, Issue 32
Cold Stratification and Exogenous Nitrates Entail Similar Functional Proteome Adjustments during Arabidopsis Seed Dormancy Release
journal, October 2012
- Arc, Erwann; Chibani, Kamel; Grappin, Philippe
- Journal of Proteome Research, Vol. 11, Issue 11
Dynamic quantitative trait locus analysis of seed dormancy at three development stages in rice
journal, February 2014
- Cheng, Jinping; Wang, Ling; Du, Wenli
- Molecular Breeding, Vol. 34, Issue 2
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
journal, December 2001
- Livak, Kenneth J.; Schmittgen, Thomas D.
- Methods, Vol. 25, Issue 4
The role of photosynthesis and amino acid metabolism in the energy status during seed development
journal, September 2014
- Galili, Gad; Avin-Wittenberg, Tamar; Angelovici, Ruthie
- Frontiers in Plant Science, Vol. 5
Action of gibberellic acid (GA3) on dormancy and activity of alpha-amylase in rice seeds
journal, January 2002
- Vieira, Antônio Rodrigues; Vieira, Maria das Graças Guimarães Carvalho; Fraga, Antônio C.
- Revista Brasileira de Sementes, Vol. 24, Issue 2
Protein degradation – an alternative respiratory substrate for stressed plants
journal, September 2011
- Araújo, Wagner L.; Tohge, Takayuki; Ishizaki, Kimitsune
- Trends in Plant Science, Vol. 16, Issue 9
Genetic Mapping of Anaerobic Germination-Associated QTLs Controlling Coleoptile Elongation in Rice
journal, December 2015
- Hsu, Sheng-Kai; Tung, Chih-Wei
- Rice, Vol. 8, Issue 1
A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination
journal, October 2010
- Angelovici, Ruthie; Fait, Aaron; Fernie, Alisdair R.
- New Phytologist, Vol. 189, Issue 1
Proteomics reveals potential biomarkers of seed vigor in sugarbeet
journal, March 2011
- Catusse, Julie; Meinhard, Juliane; Job, Claudette
- PROTEOMICS, Vol. 11, Issue 9
Branched-Chain Amino Acid Metabolism in Arabidopsis thaliana
journal, January 2010
- Binder, Stefan
- The Arabidopsis Book, Vol. 8
Expression of a Brassica Isopropylmalate Synthase Gene in Arabidopsis Perturbs Both Glucosinolate and Amino Acid Metabolism
journal, March 2006
- Field, Ben; Furniss, Caroline; Wilkinson, Andrew
- Plant Molecular Biology, Vol. 60, Issue 5
Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice
journal, October 2009
- Fujino, Kenji; Matsuda, Yasuyuki
- Plant Molecular Biology, Vol. 72, Issue 1-2
Target Site Specificity of the Tos17 Retrotransposon Shows a Preference for Insertion within Genes and against Insertion in Retrotransposon-Rich Regions of the Genome
journal, July 2003
- Miyao, Akio; Tanaka, Katsuyuki; Murata, Kazumasa
- The Plant Cell, Vol. 15, Issue 8
Proteomics of seed development, desiccation tolerance, germination and vigor
journal, January 2015
- Wang, Wei-Qing; Liu, Shu-Jun; Song, Song-Quan
- Plant Physiology and Biochemistry, Vol. 86
Proteomics analysis reveals distinct involvement of embryo and endosperm proteins during seed germination in dormant and non-dormant rice seeds
journal, June 2016
- Xu, Heng-Heng; Liu, Shu-Jun; Song, Shun-Hua
- Plant Physiology and Biochemistry, Vol. 103
Gene ontology analysis for RNA-seq: accounting for selection bias
journal, January 2010
- Young, Matthew D.; Wakefield, Matthew J.; Smyth, Gordon K.
- Genome Biology, Vol. 11, Issue 2
germinator : a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination
journal, December 2009
- Joosen, Ronny V. L.; Kodde, Jan; Willems, Leo A. J.
- The Plant Journal, Vol. 62, Issue 1
The role of leucine and its metabolites in protein and energy metabolism
journal, August 2015
- Duan, Yehui; Li, Fengna; Li, Yinghui
- Amino Acids, Vol. 48, Issue 1
Quantitative trait loci controlling rice seed germination under salt stress
journal, November 2010
- Wang, Zhoufei; Wang, Jianfei; Bao, Yongmei
- Euphytica, Vol. 178, Issue 3
Proteome-wide characterization of sugarbeet seed vigor and its tissue specific expression
journal, July 2008
- Catusse, J.; Strub, J. -M.; Job, C.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 29
Dynamic Quantitative Trait Loci Analysis of Seed Reserve Utilization during Three Germination Stages in Rice
journal, November 2013
- Cheng, Xinxin; Cheng, Jinping; Huang, Xi
- PLoS ONE, Vol. 8, Issue 11
Proteome-Wide Characterization of Seed Aging in Arabidopsis: A Comparison between Artificial and Natural Aging Protocols
journal, July 2008
- Rajjou, Loïc; Lovigny, Yoann; Groot, Steven P. C.
- Plant Physiology, Vol. 148, Issue 1
The Arabidopsis Aleurone Layer Responds to Nitric Oxide, Gibberellin, and Abscisic Acid and Is Sufficient and Necessary for Seed Dormancy
journal, January 2007
- Bethke, Paul C.; Libourel, Igor G. L.; Aoyama, Natsuyo
- Plant Physiology, Vol. 143, Issue 3
Branched-Chain Amino Acid Metabolism
journal, July 1984
- Harper, A. E.; Miller, R. H.; Block, K. P.
- Annual Review of Nutrition, Vol. 4, Issue 1
Proteome changes associated with dormancy release of Dongxiang wild rice seeds
journal, November 2016
- Xu, Heng-Heng; Liu, Shu-Jun; Song, Shun-Hua
- Journal of Plant Physiology, Vol. 206
Subdomain II of α-Isopropylmalate Synthase Is Essential for Activity: INFERRING A MECHANISM OF FEEDBACK INHIBITION
journal, August 2014
- Zhang, Zilong; Wu, Jian; Lin, Wei
- Journal of Biological Chemistry, Vol. 289, Issue 40
Early seedling vigour, an imperative trait for direct-seeded rice: an overview on physio-morphological parameters and molecular markers
journal, March 2015
- Mahender, A.; Anandan, A.; Pradhan, S. K.
- Planta, Vol. 241, Issue 5
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
journal, August 2011
- Li, Bo; Dewey, Colin N.
- BMC Bioinformatics, Vol. 12, Issue 1
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
journal, March 2010
- Sugimoto, K.; Takeuchi, Y.; Ebana, K.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 13
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
journal, June 2011
- Xie, Chen; Mao, Xizeng; Huang, Jiaju
- Nucleic Acids Research, Vol. 39, Issue suppl_2
OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice
journal, April 2012
- Abe, Akira; Takagi, Hiroki; Fujibe, Takahiro
- Theoretical and Applied Genetics, Vol. 125, Issue 4
Changes in Energy Metabolism and Antioxidant Defense Systems During Seed Germination of the Weed Species Ipomoea triloba L. and the Responses to Allelochemicals
journal, April 2011
- Pergo, Érica Marusa; Ishii-Iwamoto, Emy Luiza
- Journal of Chemical Ecology, Vol. 37, Issue 5
Genetic dissection of methylcrotonyl CoA carboxylase indicates a complex role for mitochondrial leucine catabolism during seed development and germination: Methylcrotonyl CoA carboxylase
journal, February 2012
- Ding, Geng; Che, Ping; Ilarslan, Hilal
- The Plant Journal, Vol. 70, Issue 4
Molecular mechanisms of seed dormancy: Molecular mechanisms of seed dormancy
journal, June 2012
- Graeber, Kai; Nakabayashi, Kazumi; Miatton, Emma
- Plant, Cell & Environment, Vol. 35, Issue 10
DSDecode: A Web-Based Tool for Decoding of Sequencing Chromatograms for Genotyping of Targeted Mutations
journal, September 2015
- Liu, Weizhi; Xie, Xianrong; Ma, Xingliang
- Molecular Plant, Vol. 8, Issue 9
The aspartate-family pathway of plants: Linking production of essential amino acids with energy and stress regulation
journal, February 2011
- Galili, Gad
- Plant Signaling & Behavior, Vol. 6, Issue 2
Disruptions in valine degradation affect seed development and germination in Arabidopsis
journal, April 2017
- Gipson, Andrew B.; Morton, Kyla J.; Rhee, Rachel J.
- The Plant Journal, Vol. 90, Issue 6
Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice
journal, August 2008
- Fujino, K.; Sekiguchi, H.; Matsuda, Y.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 34