skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins

Abstract

Motional displacements of hydrogen (H) in proteins can be measured using incoherent neutron-scattering methods. These displacements can also be calculated numerically using data from molecular dynamics simulations. An enormous amount of data on the average mean-square motional displacement (MSD) of H as a function of protein temperature, hydration, and other conditions has been collected. H resides in a wide spectrum of sites in a protein. Some H are tightly bound to molecular chains, and the H motion is dictated by that of the chain. Other H are quite independent. As a result, there is a distribution of motions and MSDs of H within a protein that is denoted dynamical heterogeneity. The goal of this paper is to incorporate a distribution of MSDs into models of the H incoherent intermediate scattering function, I(Q,t), that is calculated and observed. In conclusion, the aim is to contribute information on the distribution as well as on the average MSD from comparison of the models with simulations and experiment. For example, we find that simulations of I(Q,t) in lysozyme are well reproduced if the distribution of MSDs is bimodal with two broad peaks rather than a single broad peak.

Authors:
 [1]; ORCiD logo [2];  [3]
  1. Univ. of Delaware, Newark, DE (United States). Dept. of Physics and Astronomy; Giresun Univ., Giresun (Turkey). Dept. of Physics
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). UT/ORNL Center for Molecular Biophysics
  3. Univ. of Delaware, Newark, DE (United States). Dept. of Physics and Astronomy
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1459288
Grant/Contract Number:  
AC05-00OR22725
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Biophysical Journal
Additional Journal Information:
Journal Volume: 114; Journal Issue: 10; Journal ID: ISSN 0006-3495
Publisher:
Elsevier
Country of Publication:
United States
Language:
English
Subject:
79 ASTRONOMY AND ASTROPHYSICS

Citation Formats

Vural, Derya, Smith, Jeremy C., and Glyde, Henry R.. Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins. United States: N. p., 2018. Web. doi:10.1016/j.bpj.2018.02.024.
Vural, Derya, Smith, Jeremy C., & Glyde, Henry R.. Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins. United States. doi:10.1016/j.bpj.2018.02.024.
Vural, Derya, Smith, Jeremy C., and Glyde, Henry R.. Thu . "Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins". United States. doi:10.1016/j.bpj.2018.02.024.
@article{osti_1459288,
title = {Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins},
author = {Vural, Derya and Smith, Jeremy C. and Glyde, Henry R.},
abstractNote = {Motional displacements of hydrogen (H) in proteins can be measured using incoherent neutron-scattering methods. These displacements can also be calculated numerically using data from molecular dynamics simulations. An enormous amount of data on the average mean-square motional displacement (MSD) of H as a function of protein temperature, hydration, and other conditions has been collected. H resides in a wide spectrum of sites in a protein. Some H are tightly bound to molecular chains, and the H motion is dictated by that of the chain. Other H are quite independent. As a result, there is a distribution of motions and MSDs of H within a protein that is denoted dynamical heterogeneity. The goal of this paper is to incorporate a distribution of MSDs into models of the H incoherent intermediate scattering function, I(Q,t), that is calculated and observed. In conclusion, the aim is to contribute information on the distribution as well as on the average MSD from comparison of the models with simulations and experiment. For example, we find that simulations of I(Q,t) in lysozyme are well reproduced if the distribution of MSDs is bimodal with two broad peaks rather than a single broad peak.},
doi = {10.1016/j.bpj.2018.02.024},
journal = {Biophysical Journal},
number = 10,
volume = 114,
place = {United States},
year = {Thu May 24 00:00:00 EDT 2018},
month = {Thu May 24 00:00:00 EDT 2018}
}

Journal Article:
Free Publicly Available Full Text
This content will become publicly available on May 24, 2019
Publisher's Version of Record

Save / Share: