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Title: Tools for model-building with cryo-EM maps

Abstract

There are new tools available to you in Phenix for interpreting cryo-EM maps. You can automatically sharpen (or blur) a map with phenix.auto_sharpen and you can segment a map with phenix.segment_and_split_map. If you have overlapping partial models for a map, you can merge them with phenix.combine_models. If you have a protein-RNA complex and protein chains have been accidentally built in the RNA region, you can try to remove them with phenix.remove_poor_fragments. You can put these together and automatically sharpen, segment and build a map with phenix.map_to_model.

Authors:
ORCiD logo [1]
  1. Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Publication Date:
Research Org.:
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Sponsoring Org.:
USDOE; National Institutes of Health (NIH)
OSTI Identifier:
1441347
Report Number(s):
LA-UR-18-20449
Journal ID: ISSN 9999-0018
Grant/Contract Number:  
AC52-06NA25396
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Computational Crystallography Newsletter
Additional Journal Information:
Journal Volume: 9; Journal ID: ISSN 9999-0018
Publisher:
Phenix
Country of Publication:
United States
Language:
English
Subject:
97 MATHEMATICS AND COMPUTING; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Terwilliger, Thomas Charles. Tools for model-building with cryo-EM maps. United States: N. p., 2018. Web.
Terwilliger, Thomas Charles. Tools for model-building with cryo-EM maps. United States.
Terwilliger, Thomas Charles. Mon . "Tools for model-building with cryo-EM maps". United States. doi:. https://www.osti.gov/servlets/purl/1441347.
@article{osti_1441347,
title = {Tools for model-building with cryo-EM maps},
author = {Terwilliger, Thomas Charles},
abstractNote = {There are new tools available to you in Phenix for interpreting cryo-EM maps. You can automatically sharpen (or blur) a map with phenix.auto_sharpen and you can segment a map with phenix.segment_and_split_map. If you have overlapping partial models for a map, you can merge them with phenix.combine_models. If you have a protein-RNA complex and protein chains have been accidentally built in the RNA region, you can try to remove them with phenix.remove_poor_fragments. You can put these together and automatically sharpen, segment and build a map with phenix.map_to_model.},
doi = {},
journal = {Computational Crystallography Newsletter},
number = ,
volume = 9,
place = {United States},
year = {Mon Jan 01 00:00:00 EST 2018},
month = {Mon Jan 01 00:00:00 EST 2018}
}

Journal Article:
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Publisher's Version of Record
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