Quantum Mechanical Continuum Solvation Models
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journal
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August 2005 |
Volumen und Hydratationswärme der Ionen
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journal
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February 1920 |
Electric Moments of Molecules in Liquids
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journal
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August 1936 |
Self-Consistent Reaction Field Model for Aqueous and Nonaqueous Solutions Based on Accurate Polarized Partial Charges
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journal
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October 2007 |
Performance of SM8 on a Test To Predict Small-Molecule Solvation Free Energies
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journal
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June 2008 |
Generalized Born Solvation Model SM12
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journal
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December 2012 |
COSMO: a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient
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journal
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January 1993 |
A new method for incorporating solvent effect into the classical, ab initio molecular orbital and density functional theory frameworks for arbitrary shape cavity
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journal
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June 1995 |
Evaluation of Solvent Effects in Isotropic and Anisotropic Dielectrics and in Ionic Solutions with a Unified Integral Equation Method: Theoretical Bases, Computational Implementation, and Numerical Applications
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journal
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December 1997 |
A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to isotropic and anisotropic dielectrics
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journal
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August 1997 |
Solvent Effects on Structure and Reaction Mechanism: A Theoretical Study of [2 + 2] Polar Cycloaddition between Ketene and Imine
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journal
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October 1998 |
The IEF version of the PCM solvation method: an overview of a new method addressed to study molecular solutes at the QM ab initio level
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journal
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May 1999 |
Reaction field treatment of charge penetration
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journal
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April 2000 |
Quantum Calculation of Molecular Energies and Energy Gradients in Solution by a Conductor Solvent Model
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journal
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March 1998 |
Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions
- Marenich, Aleksandr V.; Cramer, Christopher J.; Truhlar, Donald G.
-
The Journal of Physical Chemistry B, Vol. 113, Issue 18, p. 6378-6396
https://doi.org/10.1021/jp810292n
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May 2009 |
Polarizable Continuum Reaction-Field Solvation Models Affording Smooth Potential Energy Surfaces
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journal
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December 2009 |
A smooth, nonsingular, and faithful discretization scheme for polarizable continuum models: The switching/Gaussian approach
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December 2010 |
Reparameterization of an Accurate, Few-Parameter Implicit Solvation Model for Quantum Chemistry: Composite Method for Implicit Representation of Solvent, CMIRS v. 1.1
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journal
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August 2016 |
Density functional theory for efficientab initio molecular dynamics simulations in solution
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April 2002 |
First-principles molecular dynamics simulations in a continuum solvent
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January 2003 |
A unified electrostatic and cavitation model for first-principles molecular dynamics in solution
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journal
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February 2006 |
Minimal parameter implicit solvent model for ab initio electronic-structure calculations
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July 2011 |
A Universal Approach to Solvation Modeling
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June 2008 |
On the Performance of Continuum Solvation Methods. A Comment on “Universal Approaches to Solvation Modeling”
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April 2009 |
‘‘ Ab initio ’’ liquid water
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journal
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December 1993 |
Ab initio molecular dynamics simulation of liquid water: Comparison of three gradient‐corrected density functionals
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journal
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July 1996 |
Structural, electronic, and bonding properties of liquid water from first principles
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journal
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August 1999 |
Isobaric-Isothermal Monte Carlo Simulations from First Principles: Application to Liquid Water at Ambient Conditions
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September 2005 |
First Principles Simulations of the Infrared Spectrum of Liquid Water Using Hybrid Density Functionals
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March 2011 |
Bulk Liquid Water at Ambient Temperature and Pressure from MP2 Theory
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October 2013 |
Density and Compressibility of Liquid Water and Ice from First-Principles Simulations with Hybrid Functionals
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July 2015 |
The solvation of Na + in water: First-principles simulations
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September 2000 |
A first principles molecular dynamics simulation of the hydrated magnesium ion
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August 2001 |
A First-Principles Molecular Dynamics Study of Calcium in Water
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September 2005 |
Hydration of alkali ions from first principles molecular dynamics revisited
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January 2007 |
Water Solvation Properties: An Experimental and Theoretical Investigation of Salt Solutions at Finite Dilution
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July 2009 |
Communication: Electronic structure of the solvated chloride anion from first principles molecular dynamics
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May 2013 |
Structural and electronic properties of aqueous NaCl solutions from ab initio molecular dynamics simulations with hybrid density functionals
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June 2014 |
Local and Global Effects of Dissolved Sodium Chloride on the Structure of Water
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March 2017 |
Isobaric−Isothermal Molecular Dynamics Simulations Utilizing Density Functional Theory: An Assessment of the Structure and Density of Water at Near-Ambient Conditions
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September 2009 |
Density, structure, and dynamics of water: The effect of van der Waals interactions
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January 2011 |
Structure and Dynamics of Liquid Water from ab Initio Molecular Dynamics—Comparison of BLYP, PBE, and revPBE Density Functionals with and without van der Waals Corrections
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March 2012 |
Ab initio molecular dynamics study of water at constant pressure using converged basis sets and empirical dispersion corrections
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July 2012 |
Dispersion corrected RPBE studies of liquid water
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August 2014 |
The individual and collective effects of exact exchange and dispersion interactions on the ab initio structure of liquid water
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August 2014 |
A systematic study of chloride ion solvation in water using van der Waals inclusive hybrid density functional theory
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July 2015 |
Perspective: How good is DFT for water?
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April 2016 |
Theoretical studies of enzymic reactions: Dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme
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May 1976 |
A combinedab initio quantum mechanical and molecular mechanical method for carrying out simulations on complex molecular systems: Applications to the CH3Cl + Cl? exchange reaction and gas phase protonation of polyethers
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December 1986 |
A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations
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July 1990 |
Hybrid Quantum and Molecular Mechanical Simulations: An Alternative Avenue to Solvent Effects in Organic Chemistry
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January 1996 |
QM/MM: what have we learned, where are we, and where do we go from here?
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July 2006 |
QM/MM Methods for Biomolecular Systems
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January 2009 |
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
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July 1983 |
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins †
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April 1998 |
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
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May 1995 |
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
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October 2003 |
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
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March 1988 |
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
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journal
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January 1996 |
Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides †
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July 2001 |
Self-Consistent Equations Including Exchange and Correlation Effects
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November 1965 |
An effective fragment method for modeling solvent effects in quantum mechanical calculations
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August 1996 |
The Effective Fragment Potential Method: A QM-Based MM Approach to Modeling Environmental Effects in Chemistry
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January 2001 |
Extension of the Effective Fragment Potential Method to Macromolecules
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June 2016 |
Excited States in Solution through Polarizable Embedding
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October 2010 |
Excitation Energies in Solution: The Fully Polarizable QM/MM/PCM Method
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March 2011 |
Solvation Effects on Electronic Transitions: Exploring the Performance of Advanced Solvent Potentials in Polarizable Embedding Calculations
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June 2011 |
LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields: A QM/MM Program for Simulations with Multipolar and Polarizable Force Fields
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January 2016 |
A QM/MM Approach Using the AMOEBA Polarizable Embedding: From Ground State Energies to Electronic Excitations
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July 2016 |
TINKTEP: A fully self-consistent, mutually polarizable QM/MM approach based on the AMOEBA force field
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September 2016 |
Optimization of quantum mechanical molecular mechanical partitioning schemes: Gaussian delocalization of molecular mechanical charges and the double link atom method
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journal
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December 2002 |
Quantum Mechanics/Molecular Mechanics Electrostatic Embedding with Continuous and Discrete Functions
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journal
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July 2006 |
Simple formulas for improved point-charge electrostatics in classical force fields and hybrid quantum mechanical/molecular mechanical embedding
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journal
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January 2008 |
A polarizable force-field model for quantum-mechanical-molecular-mechanical Hamiltonian using expansion of point charges into orbitals
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journal
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October 2008 |
Including Charge Penetration Effects in Molecular Modeling
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journal
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October 2010 |
Partial Atomic Charges and Screened Charge Models of the Electrostatic Potential
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journal
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May 2012 |
Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations: Interfacing Q-Chem and CHARMM to Perform QM/MM Reaction Path Calculations
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journal
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March 2007 |
Interfacing ab Initio Quantum Mechanical Method with Classical Drude Osillator Polarizable Model for Molecular Dynamics Simulation of Chemical Reactions
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journal
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June 2008 |
Solvent Boundary Potentials for Hybrid QM/MM Computations Using Classical Drude Oscillators: A Fully Polarizable Model
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journal
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October 2012 |
Toward QM/MM Simulation of Enzymatic Reactions with the Drude Oscillator Polarizable Force Field
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journal
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March 2014 |
A solvation model using a hybrid quantum mechanical/molecular mechanical potential with fluctuating solvent charges
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journal
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November 1997 |
Linear Response Theory and Electronic Transition Energies for a Fully Polarizable QM/Classical Hamiltonian
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journal
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October 2012 |
A gauge invariant multiscale approach to magnetic spectroscopies in condensed phase: General three-layer model, computational implementation and pilot applications
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journal
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June 2013 |
Excited States of the Bacteriochlorophyll b Dimer of Rhodopseudomonas viridis: A QM/MM Study of the Photosynthetic Reaction Center That Includes MM Polarization
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journal
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April 1995 |
Critical assessment of the hybrid QM/MM-pol-vib approach: Small water clusters using polarizable flexible water potentials
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journal
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January 2000 |
Density functional self-consistent quantum mechanics/molecular mechanics theory for linear and nonlinear molecular properties: Applications to solvated water and formaldehyde
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journal
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April 2007 |
Polarizable Density Embedding: A New QM/QM/MM-Based Computational Strategy
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December 2014 |
Electronic Energy Transfer in Condensed Phase Studied by a Polarizable QM/MM Model
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June 2009 |
QuanPol: A full spectrum and seamless QM/MM program
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journal
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September 2013 |
Coupling density functional theory to polarizable force fields for efficient and accurate Hamiltonian molecular dynamics simulations
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June 2013 |
A polarizable QM/MM approach to the molecular dynamics of amide groups solvated in water
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journal
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March 2016 |
Toward a Unified Modeling of Environment and Bridge-Mediated Contributions to Electronic Energy Transfer: A Fully Polarizable QM/MM/PCM Approach
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October 2012 |
Geometry Optimization in Polarizable QM/MM Models: The Induced Dipole Formulation
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journal
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March 2014 |
Achieving Linear Scaling in Computational Cost for a Fully Polarizable MM/Continuum Embedding
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journal
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January 2015 |
The representation of van der Waals (vdW) interactions in molecular mechanics force fields: potential form, combination rules, and vdW parameters
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journal
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September 1992 |
Compatibility of Quantum Chemical Methods and Empirical (MM) Water Models in Quantum Mechanics/Molecular Mechanics Liquid Water Simulations
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journal
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November 2009 |
Computation of Hydration Free Energies Using the Multiple Environment Single System Quantum Mechanical/Molecular Mechanical Method
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journal
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December 2015 |
An efficient protocol for obtaining accurate hydration free energies using quantum chemistry and reweighting from molecular dynamics simulations
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October 2016 |
Density-functional exchange-energy approximation with correct asymptotic behavior
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September 1988 |
Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
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January 1988 |
Comparison of simple potential functions for simulating liquid water
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July 1983 |
Advances in molecular quantum chemistry contained in the Q-Chem 4 program package
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September 2014 |
LIBEFP: A new parallel implementation of the effective fragment potential method as a portable software library
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July 2013 |
Hybrid MPI/OpenMP parallelization of the effective fragment potential method in the libefp software library
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journal
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November 2014 |
Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation
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May 2003 |
Current Status of the AMOEBA Polarizable Force Field
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journal
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March 2010 |
Polarizable Atomic Multipole-Based Molecular Mechanics for Organic Molecules
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August 2011 |
Energy components of aqueous solution: Insight from hybrid QM/MM simulations using a polarizable solvent model
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journal
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June 1997 |
Effect of Protein Environment within Cytochrome P450cam Evaluated Using a Polarizable-Embedding QM/MM Method
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journal
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February 2014 |
Unravelling the Origin of Intermolecular Interactions Using Absolutely Localized Molecular Orbitals
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journal
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September 2007 |
Defining the contributions of permanent electrostatics, Pauli repulsion, and dispersion in density functional theory calculations of intermolecular interaction energies
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journal
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March 2016 |
Probing non-covalent interactions with a second generation energy decomposition analysis using absolutely localized molecular orbitals
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January 2016 |
Energy decomposition analysis approaches and their evaluation on prototypical protein–drug interaction patterns
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January 2015 |
Assessing Ion–Water Interactions in the AMOEBA Force Field Using Energy Decomposition Analysis of Electronic Structure Calculations
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October 2016 |
Convergence acceleration of iterative sequences. the case of scf iteration
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July 1980 |
ImprovedSCF convergence acceleration
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January 1982 |
ωB97X-V: A 10-parameter, range-separated hybrid, generalized gradient approximation density functional with nonlocal correlation, designed by a survival-of-the-fittest strategy
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January 2014 |
Nonlocal van der Waals density functional: The simpler the better
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December 2010 |
Accurate Description of Intermolecular Interactions Involving Ions Using Symmetry-Adapted Perturbation Theory
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journal
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May 2015 |
Accurate and Efficient Quantum Chemistry Calculations for Noncovalent Interactions in Many-Body Systems: The XSAPT Family of Methods
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December 2014 |
Property-optimized Gaussian basis sets for molecular response calculations
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October 2010 |
An efficient self-consistent field method for large systems of weakly interacting components
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May 2006 |
Polarization contributions to intermolecular interactions revisited with fragment electric-field response functions
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September 2015 |
Ion Solvation Thermodynamics from Simulation with a Polarizable Force Field
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December 2003 |
Dependence of ion hydration on the sign of the ion’s charge
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January 2005 |
An improved treatment of empirical dispersion and a many-body energy decomposition scheme for the explicit polarization plus symmetry-adapted perturbation theory (XSAPT) method
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July 2013 |
Theoretical Study of the Binding Energy of a Methane Molecule in a (H 2 O) 20 Dodecahedral Cage
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May 2014 |
Mapping the genome of meta-generalized gradient approximation density functionals: The search for B97M-V
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February 2015 |
Electrostatic embedding in large-scale first principles quantum mechanical calculations on biomolecules
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December 2011 |
Convergence of Electronic Structure with the Size of the QM Region: Example of QM/MM NMR Shieldings
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June 2012 |
Electronic Absorption Spectra from MM and ab Initio QM/MM Molecular Dynamics: Environmental Effects on the Absorption Spectrum of Photoactive Yellow Protein
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September 2012 |
Convergence in the QM-only and QM/MM modeling of enzymatic reactions: A case study for acetylene hydratase
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July 2013 |
How Large Should the QM Region Be in QM/MM Calculations? The Case of Catechol O -Methyltransferase
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journal
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October 2016 |
Influence of Coupling and Embedding Schemes on QM Size Convergence in QM/MM Approaches for the Example of a Proton Transfer in DNA
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February 2017 |
Systematic Quantum Mechanical Region Determination in QM/MM Simulation
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January 2017 |
Toward a Practical Method for Adaptive QM/MM Simulations
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July 2009 |
Recent progress in adaptive multiscale molecular dynamics simulations of soft matter
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January 2010 |
Gaussian multipole functions for describing molecular charge distributions
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June 1993 |
Gaussian multipoles in practice: Electrostatic energies for intermolecular potentials
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November 1994 |
Evaluation of charge penetration between distributed multipolar expansions
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May 2000 |
Electrostatic energy in the effective fragment potential method: Theory and application to benzene dimer
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January 2006 |
Improved Formulas for the Calculation of the Electrostatic Contribution to the Intermolecular Interaction Energy from Multipolar Expansion of the Electronic Distribution
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December 2003 |
Towards a force field based on density fitting
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March 2006 |
Gaussian Multipole Model (GMM)
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journal
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November 2009 |
Application of Gaussian Electrostatic Model (GEM) Distributed Multipoles in the AMOEBA Force Field
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September 2012 |
The use of the promolecular charge density to approximate the penetration contribution to intermolecular electrostatic energies
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January 2006 |
Electrostatic Damping Functions and the Penetration Energy
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June 2011 |
Accurate Intermolecular Potentials with Physically Grounded Electrostatics
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May 2011 |
Screened Electrostatic Interactions in Molecular Mechanics
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September 2014 |
Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles
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January 2016 |
General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
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May 2015 |
Advanced Potential Energy Surfaces for Molecular Simulation
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August 2016 |
Embedding beyond electrostatics—The role of wave function confinement
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September 2016 |
Importance of the Intermolecular Pauli Repulsion in Embedding Calculations for Molecular Properties: The Case of Excitation Energies for a Chromophore in Hydrogen-Bonded Environments
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September 2011 |
Quantum‐mechanical calculations of solvation free energies. A combined ab initio pseudopotential free‐energy perturbation approach
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journal
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September 1992 |
New approaches to the description of short-range repulsion interactions in hybrid quantum/classical systems
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journal
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October 2000 |
Nuclear Magnetic Resonance Chemical Shifts from Hybrid DFT QM/MM Calculations
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journal
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March 2004 |
Contributions of pauli repulsions to the energetics and physical properties computed in QM/MM methods
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journal
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July 2013 |
Frozen density functional approach for ab initio calculations of solvated molecules
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journal
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July 1993 |
Kohn-Sham equations with constrained electron density: an iterative evaluation of the ground-state electron density of interacting molecules
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journal
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January 1996 |
The a b i n i t i o model potential representation of the crystalline environment. Theoretical study of the local distortion on NaCl:Cu +
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November 1988 |
Embedding Fragment ab Initio Model Potentials in CASSCF/CASPT2 Calculations of Doped Solids: Implementation and Applications
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February 2008 |
Direct evaluation of the Pauli repulsion energy using `classical' wavefunctions in hybrid quantum/classical potential energy surfaces
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June 1998 |
A theoretical study of the solvent shift to the transition in formaldehyde with an effective discrete quantum chemical solvent model including non-electrostatic perturbation
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October 2006 |
On the coupling of intermolecular polarization and repulsion through pseudo-potentials
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January 2009 |
Intermolecular interactions: Elaboration on an additive procedure including an explicit charge-transfer contribution
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January 1986 |
Representation of Zn(II) complexes in polarizable molecular mechanics. Further refinements of the electrostatic and short-range contributions. Comparisons with parallel ab initio computations
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August 2005 |
An overlap model for estimating the anisotropy of repulsion
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February 1990 |
An approximate formula for the intermolecular Pauli repulsion between closed shell molecules
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December 1996 |
An approximate formula for the intermolecular Pauli repulsion between closed shell molecules. II. Application to the effective fragment potential method
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journal
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March 1998 |
Calculation of Intermolecular Interaction Energies by Direct Numerical Integration over Electron Densities. 2. An Improved Polarization Model and the Evaluation of Dispersion and Repulsion Energies
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journal
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March 2003 |
Comparison of overlap-based models for approximating the exchange-repulsion energy
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journal
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June 2006 |
Toward a Physically Motivated Force Field: Hydrogen Bond Directionality from a Symmetry-Adapted Perturbation Theory Perspective
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journal
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February 2016 |
Beyond Born–Mayer: Improved Models for Short-Range Repulsion in ab Initio Force Fields
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journal
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July 2016 |
Charge-dependent model for many-body polarization, exchange, and dispersion interactions in hybrid quantum mechanical∕molecular mechanical calculations
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journal
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November 2007 |
Charge-dependent many-body exchange and dispersion interactions in combined QM/MM simulations
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journal
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December 2015 |