skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Accessing the Vibrational Signatures of Amino Acid Ions Embedded in Water Clusters

Journal Article · · Journal of Physical Chemistry Letters

We present an infrared predissociation (IRPD) study of microsolvated GlyH+(H2O)n and GlyH+(D2O)n clusters, formed inside of a cryogenic ion trap via condensation of H2O or D2O onto the protonated glycine ions. The resulting IRPD spectra, showing characteristic O–H and O–D stretches, indicate that H/D exchange reactions are quenched when the ion trap is held at 80 K, minimizing the presence of isotopomers. Comparisons of GlyH+(H2O)n and GlyH+(D2O)n spectra clearly highlight and distinguish the vibrational signatures of the water solvent molecules from those of the core GlyH+ ion, allowing for quick assessment of solvation structures. Without the aid of calculations, we can already infer solvation motifs and the presence of multiple conformations. Furthermore, the use of a cryogenic ion trap to cluster solvent molecules around ions of interest and control H/D exchange reactions is broadly applicable and should be extendable to studies of more complex peptidic ions in large solvated clusters.

Research Organization:
Univ. of Wisconsin, Madison, WI (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
SC0010326
OSTI ID:
1434670
Journal Information:
Journal of Physical Chemistry Letters, Vol. 9; ISSN 1948-7185
Publisher:
American Chemical SocietyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 19 works
Citation information provided by
Web of Science

References (28)

Water journal January 2012
Infrared multiple photon dissociation spectroscopy of trapped ions journal January 2011
Vibrational spectroscopy of bare and solvated ionic complexes of biological relevance journal February 2009
Gas-phase infrared multiple photon dissociation spectroscopy of mass-selected molecular ions journal July 2006
Cryogenic ion trap vibrational spectroscopy of hydrogen-bonded clusters relevant to atmospheric chemistry journal December 2014
Interplay of Intra- and Intermolecular H-Bonding in a Progressively Solvated Macrocyclic Peptide journal April 2012
Spectroscopic studies of cold, gas-phase biomolecular ions journal July 2009
Mixed 14/16 Helices in the Gas Phase: Conformation-Specific Spectroscopy of Z-(Gly) n , n = 1, 3, 5 journal October 2012
Hydration of guanidinium depends on its local environment journal January 2015
Interaction between ionic liquid cation and water: infrared predissociation study of [bmim] + ·(H 2 O) n clusters journal January 2016
Cryogenic Ion Chemistry and Spectroscopy journal August 2013
Stepwise microhydration of aromatic amide cations: water solvation networks revealed by the infrared spectra of acetanilide + –(H 2 O) n clusters ( n ≤ 3) journal January 2018
A dual cryogenic ion trap spectrometer for the formation and characterization of solvated ionic clusters journal November 2015
Examination of the secondary structure of proteins by deconvolved FTIR spectra journal March 1986
Obtaining information about protein secondary structures in aqueous solution using Fourier transform IR spectroscopy journal February 2015
Isomer-Specific IR–IR Double Resonance Spectroscopy of D 2 -Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap journal April 2012
Effects of Ions on Hydrogen-Bonding Water Networks in Large Aqueous Nanodrops journal June 2012
Isolating the Spectral Signatures of Individual Sites in Water Networks Using Vibrational Double-Resonance Spectroscopy of Cluster Isotopomers journal July 2010
Isotopomer-selective spectra of a single intact H2O molecule in the Cs+(D2O)5H2O isotopologue: Going beyond pattern recognition to harvest the structural information encoded in vibrational spectra journal February 2016
Deuterium Exchange Reactions as a Probe of Biomolecule Structure. Fundamental Studies of Gas Phase H/D Exchange Reactions of Protonated Glycine Oligomers with D2O, CD3OD, CD3CO2D, and ND3 journal December 1995
Infrared Signature of Structures Associated with the H+(H2O)n (n = 6 to 27) Clusters. journal August 2004
Direct proportionality of the hydrogen bonding energy and the intensification of the stretching ν(XH) vibration in infrared spectra journal July 1999
An empirical correlation between stretching vibration redshift and hydrogen bond length journal January 2000
A correlation between the proton stretching vibration red shift and the hydrogen bond length in polycrystalline amino acids and peptides journal January 2005
Determination of Noncovalent Docking by Infrared Spectroscopy of Cold Gas-Phase Complexes journal January 2012
Spectroscopy and conformational preferences of gas-phase helices journal January 2009
Isomer-Selective Detection of Hydrogen-Bond Vibrations in the Protonated Water Hexamer journal May 2013
IR-IR Conformation Specific Spectroscopy of Na+(Glucose) Adducts journal September 2017

Cited By (1)

Cyclic dipeptide peroxosolvates: first direct evidence for hydrogen bonding between hydrogen peroxide and a peptide backbone journal January 2019

Similar Records

Competition between Solvation and Intramolecular Hydrogen-Bonding in Microsolvated Protonated Glycine and β-Alanine
Journal Article · Fri Feb 07 00:00:00 EST 2020 · Journal of Physical Chemistry. A, Molecules, Spectroscopy, Kinetics, Environment, and General Theory · OSTI ID:1434670

Microsolvation Structures of Protonated Glycine and L-Alanine
Journal Article · Mon Mar 25 00:00:00 EDT 2019 · Journal of Physical Chemistry. A, Molecules, Spectroscopy, Kinetics, Environment, and General Theory · OSTI ID:1434670

Comment on “Microhydration of Biomolecules: Revealing the Native Structures by Cold Ion IR Spectroscopy”
Journal Article · Thu Mar 03 00:00:00 EST 2022 · Journal of Physical Chemistry Letters · OSTI ID:1434670