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Title: Sample manipulation and data assembly for robust microcrystal synchrotron crystallography

Journal Article · · IUCrJ

With the recent developments in microcrystal handling, synchrotron microdiffraction beamline instrumentation and data analysis, microcrystal crystallography with crystal sizes of less than 10 µm is appealing at synchrotrons. However, challenges remain in sample manipulation and data assembly for robust microcrystal synchrotron crystallography. Here, the development of micro-sized polyimide well-mounts for the manipulation of microcrystals of a few micrometres in size and the implementation of a robust data-analysis method for the assembly of rotational microdiffraction data sets from many microcrystals are described. The method demonstrates that microcrystals may be routinely utilized for the acquisition and assembly of complete data sets from synchrotron microdiffraction beamlines.

Research Organization:
Brookhaven National Laboratory (BNL), Upton, NY (United States); Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Office of Science (SC), Biological and Environmental Research (BER); National Institutes of Health (NIH)
Grant/Contract Number:
SC0012704; KC0401040; AC02-06CH11357
OSTI ID:
1433744
Alternate ID(s):
OSTI ID: 1434774; OSTI ID: 1466304
Report Number(s):
BNL-203558-2018-JAAM; IUCRAJ; PII: S2052252518005389
Journal Information:
IUCrJ, Journal Name: IUCrJ Vol. 5 Journal Issue: 3; ISSN 2052-2525
Publisher:
International Union of CrystallographyCopyright Statement
Country of Publication:
United Kingdom
Language:
English
Citation Metrics:
Cited by: 27 works
Citation information provided by
Web of Science

References (52)

Single mimivirus particles intercepted and imaged with an X-ray laser journal February 2011
Structures from Anomalous Diffraction of Native Biological Macromolecules journal May 2012
Micro-crystallography comes of age journal October 2012
Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography journal August 2015
Serial crystallography on in vivo grown microcrystals using synchrotron radiation journal February 2014
Overview of the CCP 4 suite and current developments journal March 2011
MeshAndCollect : an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines journal October 2015
Room-temperature macromolecular serial crystallography using synchrotron radiation journal May 2014
Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data journal June 2013
DIALS : implementation and evaluation of a new integration package journal February 2018
High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography journal May 2012
Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation journal May 2017
Femtosecond X-ray protein nanocrystallography journal February 2011
Towards automated crystallographic structure refinement with phenix.refine journal March 2012
PROCHECK: a program to check the stereochemical quality of protein structures journal April 1993
Mix-and-diffuse serial synchrotron crystallography journal October 2017
Predicting the X-ray lifetime of protein crystals journal December 2013
How good are my data and what is the resolution? journal June 2013
Serial femtosecond crystallography: the first five years journal February 2015
NSLS-II biomedical beamlines for micro-crystallography, FMX, and for highly automated crystallography, AMX: New opportunities for advanced data collection
  • Fuchs, Martin R.; Bhogadi, Dileep K.; Jakoncic, Jean
  • PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON SYNCHROTRON RADIATION INSTRUMENTATION – SRI2015, AIP Conference Proceedings https://doi.org/10.1063/1.4952829
conference January 2016
Radiation Damage in Macromolecular Crystallography book January 2017
Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements journal September 2010
Improved reproducibility of unit-cell parameters in macromolecular cryocrystallography by limiting dehydration during crystal mounting journal July 2014
The application of hierarchical cluster analysis to the selection of isomorphous crystals journal May 2012
Efficient merging of data from multiple samples for determination of anomalous substructure journal March 2016
Automated identification of elemental ions in macromolecular crystal structures journal March 2014
Diffraction-geometry refinement in the DIALS framework journal March 2016
Macromolecular microcrystallography journal April 2011
Room-temperature serial crystallography at synchrotron X-ray sources using slowly flowing free-standing high-viscosity microstreams journal January 2015
Processing and post-refinement of oscillation camera data journal December 1979
Clustering procedures for the optimal selection of data sets from multiple crystals in macromolecular crystallography journal July 2013
EIGER detector: application in macromolecular crystallography journal August 2016
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
Fully automatic macromolecular crystallography: the impact of MASSIF-1 on the optimum acquisition and quality of data journal March 2016
Features and development of Coot journal March 2010
Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal journal March 2016
Multi-crystal native SAD analysis at 6 keV journal September 2014
Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams journal April 2015
Room-temperature macromolecular crystallography using a micro-patterned silicon chip with minimal background scattering journal May 2016
Lipidic cubic phase serial millisecond crystallography using synchrotron radiation journal March 2015
Pink-beam serial crystallography journal November 2017
A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering journal May 2015
Experimental phasing with SHELXC / D / E : combining chain tracing with density modification journal March 2010
Experimental determination of the radiation dose limit for cryocooled protein crystals journal March 2006
Protein microcrystallography using synchrotron radiation journal August 2017
Merging of synchrotron serial crystallographic data by a genetic algorithm journal August 2016
Crystal Structure of a Lipid G Protein-Coupled Receptor journal February 2012
The minimum crystal size needed for a complete diffraction data set journal March 2010
XFELs for structure and dynamics in biology journal May 2017
How baculovirus polyhedra fit square pegs into round holes to robustly package viruses journal December 2009
Automated Structure Solution with the PHENIX Suite book January 2008
A multicrystal diffraction data-collection approach for studying structural dynamics with millisecond temporal resolution journal October 2016

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