skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Structurally Ordered Nanowire Formation from Co-Assembly of DNA Origami and Collagen-Mimetic Peptides

Journal Article · · Journal of the American Chemical Society
DOI:https://doi.org/10.1021/jacs.7b08087· OSTI ID:1416014
 [1];  [2];  [1];  [3];  [1]; ORCiD logo [2]
  1. Emory Univ., Atlanta, GA (United States). Department of Chemistry
  2. Georgia Institute of Technology and Emory University, Atlanta, GA (United States). Wallace H. Coulter Department of Biomedical Engineering
  3. Argonne National Lab. (ANL), Argonne, IL (United States). X-ray Science Division

In this paper, we describe the co-assembly of two different building units: collagen-mimetic peptides and DNA origami. Two peptides CP++ and sCP++ are designed with a sequence comprising a central block (Pro-Hyp-Gly) and two positively charged domains (Pro-Arg-Gly) at both N- and C-termini. Co-assembly of peptides and DNA origami two-layer (TL) nanosheets affords the formation of one-dimensional nanowires with repeating periodicity of similar to 10 nm. Structural analyses suggest a face-to-face stacking of DNA nanosheets with peptides aligned perpendicularly to the sheet surfaces. We demonstrate the potential of selective peptide-DNA association between face-to-face and edge-to-edge packing by tailoring the size of DNA nanostructures. Finally, this study presents an attractive strategy to create hybrid biomolecular assemblies from peptide and DNA-based building blocks that takes advantage of the intrinsic chemical and physical properties of the respective components to encode structural and, potentially, functional complexity within readily accessible biomimetic materials.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Science Foundation (NSF)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1416014
Journal Information:
Journal of the American Chemical Society, Vol. 139, Issue 40; ISSN 0002-7863
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 42 works
Citation information provided by
Web of Science

References (30)

De novo protein design: how do we expand into the universe of possible protein structures? journal August 2015
Programmable materials and the nature of the DNA bond journal February 2015
Structure of RNA and RNA binding site in tobacco mosaic virus from 4-Å map calculated from X-ray fibre diagrams journal May 1977
Tuning the Inter-nanofibril Interaction To Regulate the Morphology and Function of Peptide/DNA Co-assembled Viral Mimics journal July 2017
A De Novo Virus-Like Topology for Synthetic Virions journal September 2016
Design and self-assembly of simple coat proteins for artificial viruses journal August 2014
Precision Templating with DNA of a Virus-like Particle with Peptide Nanostructures journal April 2013
Encapsulation of DNA-Templated Chromophore Assemblies within Virus Protein Nanotubes
  • de la Escosura, Andrés; Janssen, Pim G. A.; Schenning, Albertus P. H. J.
  • Angewandte Chemie International Edition, Vol. 49, Issue 31, p. 5335-5338 https://doi.org/10.1002/anie.201001702
journal July 2010
Reciprocal Self-Assembly of Peptide-DNA Conjugates into a Programmable Sub-10-nm Supramolecular Deoxyribonucleoprotein journal August 2016
Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes journal March 2017
Computational design of co-assembling protein–DNA nanowires journal September 2015
Designer nanoscale DNA assemblies programmed from the top down journal May 2016
Three-Dimensional Structures Self-Assembled from DNA Bricks journal November 2012
Folding DNA to create nanoscale shapes and patterns journal March 2006
Design and self-assembly of two-dimensional DNA crystals journal August 1998
Amyloid fibrils nucleated and organized by DNA origami constructions journal June 2014
DNA-Templated Self-Assembly of Protein Arrays and Highly Conductive Nanowires journal September 2003
Oligonucleotide-directed self-assembly of proteins: semisynthetic DNA—streptavidin hybrid molecules as connectors for the generation of macroscopic arrays and the construction of supramolecular bioconjugates journal January 1994
Rational Design of Multilayer Collagen Nanosheets with Compositional and Structural Control journal June 2015
Structurally Homogeneous Nanosheets from Self-Assembly of a Collagen-Mimetic Peptide journal June 2014
Structurally Defined Nanoscale Sheets from Self-Assembly of Collagen-Mimetic Peptides journal March 2014
Multi-hierarchical self-assembly of a collagen mimetic peptide from triple helix to nanofibre and hydrogel journal August 2011
Dissecting Electrostatic Contributions to Folding and Self-Assembly Using Designed Multicomponent Peptide Systems journal March 2016
Peptide tessellation yields micrometre-scale collagen triple helices journal July 2016
Tuning the thermosensitive properties of hybrid collagen peptide–polymer hydrogels journal January 2014
Prediction of Collagen Stability from Amino Acid Sequence journal March 2005
Crystal structure of (Gly-Pro-Hyp)9: Implications for the collagen molecular model journal May 2012
The role of DNA shape in protein–DNA recognition journal October 2009
Chain Dimensions and Hydration Behavior of Collagen Model Peptides in Aqueous Solution: [Glycyl-4( R )-hydroxyprolyl-4( R )-hydroxyproline] n , [Glycylprolyl-4( R )-hydroxyproline] n , and Some Related Model Peptides journal September 2008
Virus-Inspired Self-Assembled Nanofibers with Aggregation-Induced Emission for Highly Efficient and Visible Gene Delivery journal January 2017

Cited By (11)

Rationally Designed Peptidyl Virus-Like Particles Enable Targeted Delivery of Genetic Cargo journal August 2018
Achieving biopolymer synergy in systems chemistry journal January 2018
Functional Assemblies Emerging in Complex Mixtures of Peptides and Nucleic Acid-Peptide Chimeras journal June 2018
Multicomponent peptide assemblies journal January 2018
DNA origami directed 3D nanoparticle superlattice via electrostatic assembly journal January 2019
Directing an oligopeptide amphiphile into an aligned nanofiber matrix for elucidating molecular structures journal January 2019
Rationally Designed Peptidyl Virus-Like Particles Enable Targeted Delivery of Genetic Cargo journal August 2018
Toward Precise Manipulation of DNA–Protein Hybrid Nanoarchitectures journal January 2019
Hierarchically oriented organization in supramolecular peptide crystals journal September 2019
Luminescent Biofunctional Collagen Mimetic Nanofibers journal September 2019
DNA-supramolecule conjugates in theranostics journal January 2019