A short history of structure based research on the photocycle of photoactive yellow protein

doi:10.1063/1.4974172

Title: A short history of structure based research on the photocycle of photoactive yellow protein

Authors:: Schmidt, Marius

Publication Date:: 2017-05-01

Research Org.:: Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)

Sponsoring Org.:: National Science Foundation (NSF)

OSTI Identifier:: 1414462

Resource Type:: Journal Article

Journal Name:: Structural Dynamics

Additional Journal Information:: Journal Volume: 4; Journal Issue: 3; Journal ID: ISSN 2329-7778

Publisher:: American Crystallographic Association/AIP

Country of Publication:: United States

Language:: ENGLISH

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                    Schmidt, Marius. A short history of structure based research on the photocycle of photoactive yellow protein.  United States: N. p., 2017. 
        Web.  doi:10.1063/1.4974172.

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                    Schmidt, Marius. A short history of structure based research on the photocycle of photoactive yellow protein.  United States.  doi:10.1063/1.4974172.

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                    Schmidt, Marius. Mon .  
        "A short history of structure based research on the photocycle of photoactive yellow protein".  United States.  doi:10.1063/1.4974172.

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@article{osti_1414462,

  title        = {A short history of structure based research on the photocycle of photoactive yellow protein},

  author       = {Schmidt, Marius},

  abstractNote = {},

  doi          = {10.1063/1.4974172},

  journal      = {Structural Dynamics},

  issn         = {2329-7778},

  number       = 3,

  volume       = 4,

  place        = {United States},

  year         = {2017},

  month        = {5}

}

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DOI: 10.1063/1.4974172

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Works referenced in this record:

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Room temperature structures beyond 1.5 Å by serial femtosecond crystallography
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Formation of a New Buried Charge Drives a Large-Amplitude Protein Quake in Photoreceptor Activation ^†
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From The Cover: Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds
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Photoactivation of the Photoactive Yellow Protein: Why Photon Absorption Triggers a Trans-to-Cis Isomerization of the Chromophore in the Protein
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Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography
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Schotte, F.; Cho, H. S.; Kaila, V. R. I.
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New software for the singular value decomposition of time-resolved crystallographic data
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Zhao, Yi; Schmidt, Marius
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Extended subnanosecond structural dynamics of myoglobin revealed by Laue crystallography
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Bourgeois, D.; Vallone, B.; Arcovito, A.
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Short hydrogen bonds in photoactive yellow protein
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The Short-Lived Signaling State of the Photoactive Yellow Protein Photoreceptor Revealed by Combined Structural Probes
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A Molecular Movie at 1.8 Å Resolution Displays the Photocycle of Photoactive Yellow Protein, a Eubacterial Blue-Light Receptor, from Nanoseconds to Seconds ^†
journal, November 2001

Ren, Zhong; Perman, Benjamin; Šrajer, Vukica
Biochemistry, Vol. 40, Issue 46
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Structure of a Protein Photocycle Intermediate by Millisecond Time-Resolved Crystallography
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Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data
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Schmidt, M.; Pahl, R.; Srajer, V.
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Experimental determination of the radiation dose limit for cryocooled protein crystals
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Owen, R. L.; Rudino-Pinera, E.; Garman, E. F.
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Protein energy landscapes determined by five-dimensional crystallography
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Schmidt, Marius; Srajer, Vukica; Henning, Robert
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Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system
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Kupitz, Christopher; Grotjohann, Ingo; Conrad, Chelsie E.
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Laue crystallography: coming of age
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Ren, Zhong; Bourgeois, Dominique; Helliwell, John R.
Journal of Synchrotron Radiation, Vol. 6, Issue 4
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Photolysis of the Carbon Monoxide Complex of Myoglobin: Nanosecond Time-Resolved Crystallography
journal, December 1996

Srajer, V.; Teng, T. -y.; Ursby, T.
Science, Vol. 274, Issue 5293
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The kinetic dose limit in room-temperature time-resolved macromolecular crystallography
journal, January 2012

Schmidt, M.; Šrajer, V.; Purwar, N.
Journal of Synchrotron Radiation, Vol. 19, Issue 2
DOI: 10.1107/S090904951105549X

Chromophore Dynamics in the PYP Photocycle from Femtosecond Stimulated Raman Spectroscopy
journal, January 2014

Creelman, Mark; Kumauchi, Masato; Hoff, Wouter D.
The Journal of Physical Chemistry B, Vol. 118, Issue 3
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Analysis of experimental time-resolved crystallographic data by singular value decomposition
journal, April 2004

Rajagopal, Sudarshan; Schmidt, Marius; Anderson, Spencer
Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 5
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Title: A short history of structure based research on the photocycle of photoactive yellow protein

Citation Formats

Protein Conformational Relaxation and Ligand Migration in Myoglobin: A Nanosecond to Millisecond Molecular Movie from Time-Resolved Laue X-ray Diffraction † journal, November 2001

Energy Transduction on the Nanosecond Time Scale: Early Structural Events in a Xanthopsin Photocycle journal, March 1998

BioCARS: a synchrotron resource for time-resolved X-ray science journal, May 2011

Influence of the Crystalline State on Photoinduced Dynamics of Photoactive Yellow Protein Studied by Ultraviolet-Visible Transient Absorption Spectroscopy journal, June 2006

Room temperature structures beyond 1.5 Å by serial femtosecond crystallography journal, May 2015

Spectroscopic Studies of Model Photo-Receptors: Validation of a Nanosecond Time-Resolved Micro-Spectrophotometer Design Using Photoactive Yellow Protein and α-Phycoerythrocyanin journal, September 2013

High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography journal, May 2012

Coherent oscillations in ultrafast fluorescence of photoactive yellow protein journal, December 2007

New Photocycle Intermediates in the Photoactive Yellow Protein from Ectothiorhodospira halophila: Picosecond Transient Absorption Spectroscopy journal, July 1998

Structure at 0.85 Å resolution of an early protein photocycle intermediate journal, March 1998

Femtosecond Spectroscopic Observations of Initial Intermediates in the Photocycle of the Photoactive Yellow Protein from Ectothiorhodospira halophila journal, August 1999

Ligand migration pathway and protein dynamics in myoglobin: A time-resolved crystallographic study on L29W MbCO journal, August 2005

Five-dimensional crystallography journal, February 2010

Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein journal, December 2014

Photocycle populations with femtosecond excitation of crystalline photoactive yellow protein journal, June 2016

Volume-conserving trans–cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography journal, February 2013

Protein Structural Dynamics of Photoactive Yellow Protein in Solution Revealed by Pump–Probe X-ray Solution Scattering journal, February 2012

X-ray Laue Diffraction from Protein Crystals journal, March 1984

Formation of a New Buried Charge Drives a Large-Amplitude Protein Quake in Photoreceptor Activation † journal, February 2001

From The Cover: Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds journal, May 2005

Observation of Decreased Radiation Damage at Higher Dose Rates in Room Temperature Protein Crystallography journal, December 2007

Photoisomerisation quantum yield and non-linear cross-sections with femtosecond excitation of the photoactive yellow protein journal, January 2012

Application of Singular Value Decomposition to the Analysis of Time-Resolved Macromolecular X-Ray Data journal, March 2003

Photoactivation of the Photoactive Yellow Protein: Why Photon Absorption Triggers a Trans-to-Cis Isomerization of the Chromophore in the Protein journal, April 2004

Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography journal, November 2012

1.4 .ANG. Structure of Photoactive Yellow Protein, a Cytosolic Photoreceptor: Unusual Fold, Active Site, and Chromophore journal, May 1995

New software for the singular value decomposition of time-resolved crystallographic data journal, June 2009

Extended subnanosecond structural dynamics of myoglobin revealed by Laue crystallography journal, March 2006

Short hydrogen bonds in photoactive yellow protein journal, May 2004

Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein journal, May 2016

The Short-Lived Signaling State of the Photoactive Yellow Protein Photoreceptor Revealed by Combined Structural Probes journal, June 2011

The Activated Complex in Chemical Reactions journal, February 1935

A Molecular Movie at 1.8 Å Resolution Displays the Photocycle of Photoactive Yellow Protein, a Eubacterial Blue-Light Receptor, from Nanoseconds to Seconds † journal, November 2001

Structure of a Protein Photocycle Intermediate by Millisecond Time-Resolved Crystallography journal, March 1997

A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering journal, May 2015

Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data journal, March 2004

Experimental determination of the radiation dose limit for cryocooled protein crystals journal, March 2006

Spectral encoding of x-ray/optical relative delay journal, January 2011

Protein energy landscapes determined by five-dimensional crystallography journal, November 2013

Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system journal, July 2014

Laue crystallography: coming of age journal, July 1999

Photolysis of the Carbon Monoxide Complex of Myoglobin: Nanosecond Time-Resolved Crystallography journal, December 1996

The kinetic dose limit in room-temperature time-resolved macromolecular crystallography journal, January 2012

Chromophore Dynamics in the PYP Photocycle from Femtosecond Stimulated Raman Spectroscopy journal, January 2014

Analysis of experimental time-resolved crystallographic data by singular value decomposition journal, April 2004

Protein Conformational Relaxation and Ligand Migration in Myoglobin: A Nanosecond to Millisecond Molecular Movie from Time-Resolved Laue X-ray Diffraction ^†
journal, November 2001

Energy Transduction on the Nanosecond Time Scale: Early Structural Events in a Xanthopsin Photocycle
journal, March 1998

BioCARS: a synchrotron resource for time-resolved X-ray science
journal, May 2011

Influence of the Crystalline State on Photoinduced Dynamics of Photoactive Yellow Protein Studied by Ultraviolet-Visible Transient Absorption Spectroscopy
journal, June 2006

Room temperature structures beyond 1.5 Å by serial femtosecond crystallography
journal, May 2015

Spectroscopic Studies of Model Photo-Receptors: Validation of a Nanosecond Time-Resolved Micro-Spectrophotometer Design Using Photoactive Yellow Protein and α-Phycoerythrocyanin
journal, September 2013

High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography
journal, May 2012

Coherent oscillations in ultrafast fluorescence of photoactive yellow protein
journal, December 2007

New Photocycle Intermediates in the Photoactive Yellow Protein from Ectothiorhodospira halophila: Picosecond Transient Absorption Spectroscopy
journal, July 1998

Structure at 0.85 Å resolution of an early protein photocycle intermediate
journal, March 1998

Femtosecond Spectroscopic Observations of Initial Intermediates in the Photocycle of the Photoactive Yellow Protein from Ectothiorhodospira halophila
journal, August 1999

Ligand migration pathway and protein dynamics in myoglobin: A time-resolved crystallographic study on L29W MbCO
journal, August 2005

Five-dimensional crystallography
journal, February 2010

Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein
journal, December 2014

Photocycle populations with femtosecond excitation of crystalline photoactive yellow protein
journal, June 2016

Volume-conserving trans–cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
journal, February 2013

Protein Structural Dynamics of Photoactive Yellow Protein in Solution Revealed by Pump–Probe X-ray Solution Scattering
journal, February 2012

X-ray Laue Diffraction from Protein Crystals
journal, March 1984

Formation of a New Buried Charge Drives a Large-Amplitude Protein Quake in Photoreceptor Activation ^†
journal, February 2001

From The Cover: Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds
journal, May 2005

Observation of Decreased Radiation Damage at Higher Dose Rates in Room Temperature Protein Crystallography
journal, December 2007

Photoisomerisation quantum yield and non-linear cross-sections with femtosecond excitation of the photoactive yellow protein
journal, January 2012

Application of Singular Value Decomposition to the Analysis of Time-Resolved Macromolecular X-Ray Data
journal, March 2003

Photoactivation of the Photoactive Yellow Protein: Why Photon Absorption Triggers a Trans-to-Cis Isomerization of the Chromophore in the Protein
journal, April 2004

Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography
journal, November 2012

1.4 .ANG. Structure of Photoactive Yellow Protein, a Cytosolic Photoreceptor: Unusual Fold, Active Site, and Chromophore
journal, May 1995

New software for the singular value decomposition of time-resolved crystallographic data
journal, June 2009

Extended subnanosecond structural dynamics of myoglobin revealed by Laue crystallography
journal, March 2006

Short hydrogen bonds in photoactive yellow protein
journal, May 2004

Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein
journal, May 2016

The Short-Lived Signaling State of the Photoactive Yellow Protein Photoreceptor Revealed by Combined Structural Probes
journal, June 2011

The Activated Complex in Chemical Reactions
journal, February 1935

A Molecular Movie at 1.8 Å Resolution Displays the Photocycle of Photoactive Yellow Protein, a Eubacterial Blue-Light Receptor, from Nanoseconds to Seconds ^†
journal, November 2001

Structure of a Protein Photocycle Intermediate by Millisecond Time-Resolved Crystallography
journal, March 1997

A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
journal, May 2015

Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data
journal, March 2004

Experimental determination of the radiation dose limit for cryocooled protein crystals
journal, March 2006

Spectral encoding of x-ray/optical relative delay
journal, January 2011

Protein energy landscapes determined by five-dimensional crystallography
journal, November 2013

Microcrystallization techniques for serial femtosecond crystallography using photosystem II from Thermosynechococcus elongatus as a model system
journal, July 2014

Laue crystallography: coming of age
journal, July 1999

Photolysis of the Carbon Monoxide Complex of Myoglobin: Nanosecond Time-Resolved Crystallography
journal, December 1996

The kinetic dose limit in room-temperature time-resolved macromolecular crystallography
journal, January 2012

Chromophore Dynamics in the PYP Photocycle from Femtosecond Stimulated Raman Spectroscopy
journal, January 2014

Analysis of experimental time-resolved crystallographic data by singular value decomposition
journal, April 2004