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Title: Gene Ontology Terms and Automated Annotation for Energy-Related Microbial Genomes

Abstract

Gene Ontology (GO) is one of the more widely used functional ontologies for describing gene functions at various levels. The project developed 660 GO terms for describing energy-related microbial processes and filled the known gaps in this area of the GO system, and then used these terms to describe functions of 179 genes to showcase the utilities of the new resources. It hosted a series of workshops and made presentations at key meetings to inform and train scientific community members on these terms and to receive inputs from them for the GO term generation efforts. The project has developed a website for storing and displaying the resources (http://www.mengo.biochem.vt.edu/). The outcome of the project was further disseminated through peer-reviewed publications and poster and seminar presentations.

Authors:
 [1];  [2];  [3];  [1]
  1. Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States)
  2. Oregon State Univ., Corvallis, OR (United States)
  3. Univ. of Sao Paulo (Brazil)
Publication Date:
Research Org.:
Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23). Biological Systems Science Division
OSTI Identifier:
1406983
Report Number(s):
DOE-VT-SC0005011
DOE Contract Number:  
SC0005011
Resource Type:
Technical Report
Resource Relation:
Related Information: DOI:10.3389/fmicb.2014.00634and10.3389/fmicb.2014.00528
Country of Publication:
United States
Language:
English
Subject:
09 BIOMASS FUELS; Bioenergy production; Microorganisms; Gene functions; Gene Ontology (GO)

Citation Formats

Mukhopadhyay, Biswarup, Tyler, Brett M., Setubal, Joao, and Murali, T. M. Gene Ontology Terms and Automated Annotation for Energy-Related Microbial Genomes. United States: N. p., 2017. Web. doi:10.2172/1406983.
Mukhopadhyay, Biswarup, Tyler, Brett M., Setubal, Joao, & Murali, T. M. Gene Ontology Terms and Automated Annotation for Energy-Related Microbial Genomes. United States. doi:10.2172/1406983.
Mukhopadhyay, Biswarup, Tyler, Brett M., Setubal, Joao, and Murali, T. M. Fri . "Gene Ontology Terms and Automated Annotation for Energy-Related Microbial Genomes". United States. doi:10.2172/1406983. https://www.osti.gov/servlets/purl/1406983.
@article{osti_1406983,
title = {Gene Ontology Terms and Automated Annotation for Energy-Related Microbial Genomes},
author = {Mukhopadhyay, Biswarup and Tyler, Brett M. and Setubal, Joao and Murali, T. M.},
abstractNote = {Gene Ontology (GO) is one of the more widely used functional ontologies for describing gene functions at various levels. The project developed 660 GO terms for describing energy-related microbial processes and filled the known gaps in this area of the GO system, and then used these terms to describe functions of 179 genes to showcase the utilities of the new resources. It hosted a series of workshops and made presentations at key meetings to inform and train scientific community members on these terms and to receive inputs from them for the GO term generation efforts. The project has developed a website for storing and displaying the resources (http://www.mengo.biochem.vt.edu/). The outcome of the project was further disseminated through peer-reviewed publications and poster and seminar presentations.},
doi = {10.2172/1406983},
journal = {},
number = ,
volume = ,
place = {United States},
year = {Fri Nov 03 00:00:00 EDT 2017},
month = {Fri Nov 03 00:00:00 EDT 2017}
}

Technical Report:

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