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Title: FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool

Abstract

FQC is software that facilitates large-scale quality control of FASTQ files by carrying out a QC protocol, parsing results, and aggregating quality metrics within and across experiments into an interactive dashboard. The dashboard utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data.

Authors:
; ;
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1406673
Report Number(s):
PNNL-SA-124428
Journal ID: ISSN 1367-4803
DOE Contract Number:
AC05-76RL01830
Resource Type:
Journal Article
Resource Relation:
Journal Name: Bioinformatics; Journal Volume: 33; Journal Issue: 19
Country of Publication:
United States
Language:
English
Subject:
bioinformatics; dashboard

Citation Formats

Brown, Joseph, Pirrung, Meg, and McCue, Lee Ann. FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. United States: N. p., 2017. Web. doi:10.1093/bioinformatics/btx373.
Brown, Joseph, Pirrung, Meg, & McCue, Lee Ann. FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. United States. doi:10.1093/bioinformatics/btx373.
Brown, Joseph, Pirrung, Meg, and McCue, Lee Ann. Fri . "FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool". United States. doi:10.1093/bioinformatics/btx373.
@article{osti_1406673,
title = {FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool},
author = {Brown, Joseph and Pirrung, Meg and McCue, Lee Ann},
abstractNote = {FQC is software that facilitates large-scale quality control of FASTQ files by carrying out a QC protocol, parsing results, and aggregating quality metrics within and across experiments into an interactive dashboard. The dashboard utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data.},
doi = {10.1093/bioinformatics/btx373},
journal = {Bioinformatics},
number = 19,
volume = 33,
place = {United States},
year = {Fri Jun 09 00:00:00 EDT 2017},
month = {Fri Jun 09 00:00:00 EDT 2017}
}
  • FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The dashboard groups samples in dropdowns for navigation among the data sets, utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data.
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