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Title: FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool

Abstract

FQC is software that facilitates large-scale quality control of FASTQ files by carrying out a QC protocol, parsing results, and aggregating quality metrics within and across experiments into an interactive dashboard. The dashboard utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data.

Authors:
; ;
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1406673
Report Number(s):
PNNL-SA-124428
Journal ID: ISSN 1367-4803
DOE Contract Number:
AC05-76RL01830
Resource Type:
Journal Article
Resource Relation:
Journal Name: Bioinformatics; Journal Volume: 33; Journal Issue: 19
Country of Publication:
United States
Language:
English
Subject:
bioinformatics; dashboard

Citation Formats

Brown, Joseph, Pirrung, Meg, and McCue, Lee Ann. FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. United States: N. p., 2017. Web. doi:10.1093/bioinformatics/btx373.
Brown, Joseph, Pirrung, Meg, & McCue, Lee Ann. FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool. United States. doi:10.1093/bioinformatics/btx373.
Brown, Joseph, Pirrung, Meg, and McCue, Lee Ann. 2017. "FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool". United States. doi:10.1093/bioinformatics/btx373.
@article{osti_1406673,
title = {FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool},
author = {Brown, Joseph and Pirrung, Meg and McCue, Lee Ann},
abstractNote = {FQC is software that facilitates large-scale quality control of FASTQ files by carrying out a QC protocol, parsing results, and aggregating quality metrics within and across experiments into an interactive dashboard. The dashboard utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data.},
doi = {10.1093/bioinformatics/btx373},
journal = {Bioinformatics},
number = 19,
volume = 33,
place = {United States},
year = 2017,
month = 6
}
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