Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z

doi:10.1128/genomeA.00617-17

Title: Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z

Abstract

ABSTRACT The green alga Scenedesmus obliquus is an emerging platform species for the industrial production of biofuels. Here, we report the draft assembly and annotation for the nuclear, plastid, and mitochondrial genomes of S. obliquus strain DOE0152z.

Authors:

Starkenburg, S. R. ^[1]; Polle, J. E. W. ^[2]; Hovde, B. ^[1]; Daligault, H. E. ^[1]; Davenport, K. W. ^[1]; Huang, A. ^[3]; Neofotis, P. ^[2];

^[3]

Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Brooklyn College of the City Univ. of New York (United States); City Univ. (CUNY), NY (United States)
Brooklyn College of the City Univ. of New York (United States)

Publication Date:: Thu Aug 10 00:00:00 EDT 2017

Research Org.:: Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

Sponsoring Org.:: USDOE

OSTI Identifier:: 1402634

Report Number(s):: LA-UR-17-24751
Journal ID: ISSN 2169-8287

Grant/Contract Number:: AC52-06NA25396

Resource Type:: Journal Article: Accepted Manuscript

Journal Name:: Genome Announcements

Additional Journal Information:: Journal Volume: 5; Journal Issue: 32; Journal ID: ISSN 2169-8287

Publisher:: American Society for Microbiology

Country of Publication:: United States

Language:: English

Subject:: 60 APPLIED LIFE SCIENCES; Biological Science; Scenedesmus; Genome

Citation Formats


                    Starkenburg, S. R., Polle, J. E.  W., Hovde, B., Daligault, H. E., Davenport, K. W., Huang, A., Neofotis, P., and McKie-Krisberg, Z. Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z.  United States: N. p., 2017. 
        Web.  doi:10.1128/genomeA.00617-17.

Copy to clipboard


                    Starkenburg, S. R., Polle, J. E.  W., Hovde, B., Daligault, H. E., Davenport, K. W., Huang, A., Neofotis, P., & McKie-Krisberg, Z. Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z.  United States.  doi:10.1128/genomeA.00617-17.

Copy to clipboard


                    Starkenburg, S. R., Polle, J. E.  W., Hovde, B., Daligault, H. E., Davenport, K. W., Huang, A., Neofotis, P., and McKie-Krisberg, Z. Thu .  
        "Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z".  United States.  
        doi:10.1128/genomeA.00617-17.  https://www.osti.gov/servlets/purl/1402634.

Copy to clipboard


                    
@article{osti_1402634,

  title        = {Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z},

  author       = {Starkenburg, S. R. and Polle, J. E.  W. and Hovde, B. and Daligault, H. E. and Davenport, K. W. and Huang, A. and Neofotis, P. and McKie-Krisberg, Z.},

  abstractNote = {ABSTRACT The green alga Scenedesmus obliquus is an emerging platform species for the industrial production of biofuels. Here, we report the draft assembly and annotation for the nuclear, plastid, and mitochondrial genomes of S. obliquus strain DOE0152z.},

  doi          = {10.1128/genomeA.00617-17},

  journal      = {Genome Announcements},

  number       = 32,

  volume       = 5,

  place        = {United States},

  year         = {Thu Aug 10 00:00:00 EDT 2017},

  month        = {Thu Aug 10 00:00:00 EDT 2017}

}

Copy to clipboard

Journal Article:

Free Publicly Available Full Text

Accepted Manuscript (DOE)

Publisher's Version of Record

DOI: 10.1128/genomeA.00617-17

Other availability

Search WorldCat to find libraries that may hold this journal

Save / Share:

Export Metadata

Save to My Library

Works referenced in this record:

Real-Time DNA Sequencing from Single Polymerase Molecules
journal, January 2009

Eid, John; Fehr, Adrian; Gray, Jeremy
Science, Vol. 323, Issue 5910, p. 133-138
DOI: 10.1126/science.1162986

Similar records in OSTI.GOV collections:

Nuclear, Chloroplast, and Mitochondrial Genome Sequences of the Prospective Microalgal Biofuel Strain Picochlorum soloecismus

Journal Article Gonzalez-Esquer, C. Raul ; Twary, Scott N. ; Hovde, Blake T. ; ... - Genome Announcements

Picochlorum soloecismus is a halotolerant, fast-growing, and moderate-lipid-producing microalga that is being evaluated as a renewable feedstock for biofuel production. Herein, we report on an improved high-quality draft assembly and annotation for the nuclear, chloroplast, and mitochondrial genomes of P. soloecismus DOE 101.
DOI: 10.1128/genomeA.01498-17

Full Text Available
Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305 ^T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae

Journal Article Scheuner, Carmen ; Tindall, Brian J. ; Lu, Megan ; ... - Standards in Genomic Sciences

Planctomyces brasiliensis Schlesner 1990 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall consisting of a proteinaceous layer rather than a peptidoglycan layer. The first strains of P. brasiliensis, including the type strain IFAM 1448 T, were isolated from a water sample of Lagoa Vermelha, a salt pit near Rio de Janeiro, Brasil. This is the second completed genome sequence of a type strain of the genus Planctomyces to be published andmore »« less
Cited by 18
DOI: 10.1186/1944-3277-9-10

Full Text Available
Complete genome sequence of Geobacillus strain Y4.1MC1, a novel CO-utilizing Geobacillus thermoglucosidasius strain isolated from Bath Hot Spring in Yellowstone National Park

Journal Article Brumm, Phillip ; Land, Miriam L. ; Hauser, Loren John ; ... - BioEnergy Research

Geobacillus thermoglucosidasius Y4.1MC1 was isolated from a boiling spring in the lower geyser basin of Yellowstone National Park. We present this species is of interest because of its metabolic versatility. The genome consists of one circular chromosome of 3,840,330 bp and a circular plasmid of 71,617 bp with an average GC content of 44.01%. The genome is available in the GenBank database (NC_014650.1 and NC_014651.1). In addition to the expected metabolic pathways for sugars and amino acids, the Y4.1MC1 genome codes for two separate carbon monoxide utilization pathways, an aerobic oxidation pathway and an anaerobic reductive acetyl CoA (Wood-Ljungdahl) pathway.more »« less
Cited by 4
DOI: 10.1007/s12155-015-9585-2

Full Text Available
Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales

Journal Article Nouioui, Imen ; Gtari, Maher ; Goker, Markus ; ... - Genome Announcements

Frankia sp. strain G2 was originally isolated from Casuarina equisetifolia and is characterized by its ability to nodulate actinorhizal plants of the Rhamnales order, but not its original host. It represents one of the largest Frankia genomes so far sequenced (9.5 Mbp).
DOI: 10.1128/genomeA.00437-16

Full Text Available
Draft genome sequence of Pyrodictium occultum PL19 ^T, a marine hyperthermophilic species of Archaea that grows optimally at 105°C

Journal Article Utturkar, Sagar M. ; Huber, Harald ; Leptihn, Sebastian ; ... - Genome Announcements

We report here the draft genome sequence of Pyrodictium occultum PL19 ^T, a marine hyperthermophilic archaeon. In addition, the genome provides insights into molecular and cellular adaptation mechanisms to life in extreme environments and the evolution of early organisms on Earth.
DOI: 10.1128/genomeA.00016-16

Full Text Available

Similar Records

Title: Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z

Abstract

Citation Formats

Real-Time DNA Sequencing from Single Polymerase Molecules journal, January 2009

Real-Time DNA Sequencing from Single Polymerase Molecules
journal, January 2009