skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
 [1];  [2];  [3];  [4];  [4];  [5];  [2];  [6];  [7];  [7];  [4];  [8];  [2];  [4]
  1. State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040 China,, Department of Life Sciences, College of Life Science, National Taiwan University, Taipei 10617, Taiwan,, Institute of Plant Biology, College of Life Science, National Taiwan University, Taipei 10617, Taiwan,, Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27695,
  2. Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27695,
  3. State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China,
  4. State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040 China,, Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27695,
  5. Crop and Soil Sciences Department, North Carolina State University, Raleigh, NC 27695,
  6. Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27695,, College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China,
  7. State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040 China,
  8. Department of Forestry, National Chung Hsing University, Taichung 40227, Taiwan

Significance Wood is a widely used renewable feedstock for industrial production and energy generation. The secondary cell wall (SCW) is the major component of wood. Two key transcription factor families, Vascular-Related NAC-Domain (VND) and Secondary Wall-Associated NAC Domain (SND), are master gene regulators for SCW biosynthesis. However, plants exhibit stunted growth or abnormal SCW development under excess VND or SND gene expression. In this study, we show that two splice variants, PtrVND6-C1 IR and PtrSND1-A2 IR , each from VND and SND families, act as negative regulators. We propose that PtrVND6-C1 IR and PtrSND1-A2 IR function together for reciprocal cross-regulation of VND and SND families to maintain homeostasis for xylem differentiation and plant development.

Sponsoring Organization:
USDOE
Grant/Contract Number:
SC000691
OSTI ID:
1402120
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Vol. 114 Journal Issue: 45; ISSN 0027-8424
Publisher:
Proceedings of the National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 46 works
Citation information provided by
Web of Science

References (51)

Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation journal October 2010
Coordinated Activation of Cellulose and Repression of Lignin Biosynthesis Pathways in Rice journal December 2010
Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa journal January 2017
A NAC transcription factor, EjNAC1 , affects lignification of loquat fruit by regulating lignin journal April 2015
Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O -methyltransferase activity in poplar monolignol biosynthesis journal June 2015
Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis journal June 2015
TopHat: discovering splice junctions with RNA-Seq journal March 2009
The Basic Helix-Loop-Helix Protein Family: Comparative Genomics and Phylogenetic Analysis journal May 2001
VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation: Direct target genes of VND7 journal March 2011
NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants journal May 2015
Choose your partners: dimerization in eukaryotic transcription factors journal May 2008
A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses in Arabidopsis journal June 2012
A NAC domain protein family contributing to the regulation of wood formation in poplar: NAC domain protein family regulates wood formation journal June 2011
Intron retention is a major phenomenon in alternative splicing in Arabidopsis journal September 2004
SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa journal November 2013
Competitive inhibition of transcription factors by small interfering peptides journal October 2011
Genomewide identification, classification and analysis of NAC type gene family in maize journal September 2015
In vitro xylem vessel elements formation from banana embryogenic cells and expression analysis of vessel development-related genes journal February 2015
The Role of Alternative Splicing in the Control of Immune Homeostasis and Cellular Differentiation journal December 2015
SND1, a NAC Domain Transcription Factor, Is a Key Regulator of Secondary Wall Synthesis in Fibers of Arabidopsis journal November 2006
A scaling normalization method for differential expression analysis of RNA-seq data journal March 2010
Transcription switches for protoxylem and metaxylem vessel formation journal August 2005
From rags to riches journal June 2002
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) journal September 2006
Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta journal November 2008
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration journal April 2012
Systems Biology of Lignin Biosynthesis in Populus trichocarpa : Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling journal March 2014
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis journal June 2007
MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis journal November 2012
Transcriptional repression in eukaryotes: repressors and repression mechanisms journal April 2003
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors journal October 2013
ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana: ANAC012 suppresses xylary fiber formation journal June 2007
MicroProteins: small size – big impact journal August 2015
VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 Effectively Induce Transdifferentiation into Xylem Vessel Elements under Control of an Induction System journal May 2010
NAC domain function and transcriptional control of a secondary cell wall master switch: NST1 function and regulation journal October 2011
Function of alternative splicing journal February 2013
Renewable Resources for the Production of Fuels and Chemicals journal February 1976
Global Analysis of Direct Targets of Secondary Wall NAC Master Switches in Arabidopsis journal November 2010
Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa journal August 2012
Intron-Mediated Alternative Splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B Regulates Cell Wall Thickening during Fiber Development in Populus Species journal January 2014
A simple improved-throughput xylem protoplast system for studying wood formation journal August 2014
A robust chromatin immunoprecipitation protocol for studying transcription factor–DNA interactions and histone modifications in wood-forming tissue journal August 2014
Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis journal May 2014
Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors journal February 2004
Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism journal May 2011
Alternative splicing in plants – coming of age journal October 2012
Regulation of protein function by ‘microProteins’ journal December 2010
The Sequence Alignment/Map format and SAMtools journal June 2009
Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions journal April 2013
Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress journal April 2015
The WRKY superfamily of plant transcription factors journal May 2000

Similar Records

Related Subjects