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Title: Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533 T , a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia

Abstract

Desulfurococcus amylolyticusZ-533 T, a hyperthermophilic crenarcheon, ferments peptide and starch, generating acetate, isobutyrate, isovalerate, CO 2, and hydrogen. UnlikeD. amylolyticusZ-1312, it cannot use cellulose and is inhibited by hydrogen. The reported draft genome sequence ofD. amylolyticusZ-533 Twill help to understand the molecular basis for these differences.

Authors:
 [1];  [1];  [2];  [3];  [3];  [3];  [4];  [5];  [3];  [3];  [6];  [7]
  1. Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States). Dept. of Biochemistry
  2. St. Petersburg State Univ. (Russia). Centre for Algorithmic Biotechnology
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center
  5. Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States). Virginia Bioinformatics Inst., Dept. of Biological Sciences
  6. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center; King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Biology
  7. Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States). Dept. of Biochemistry, Virginia Bioinformatics Inst., Dept. of Biological Sciences
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1393210
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 5; Journal Issue: 15; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Susanti, Dwi, Johnson, Eric F., Lapidus, Alla, Han, James, Reddy, T. B. K., Mukherjee, Supratim, Pillay, Manoj, Perevalova, Anna A., Ivanova, Natalia N., Woyke, Tanja, Kyrpides, Nikos C., and Mukhopadhyay, Biswarup. Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533 T , a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia. United States: N. p., 2017. Web. doi:10.1128/genomeA.00078-17.
Susanti, Dwi, Johnson, Eric F., Lapidus, Alla, Han, James, Reddy, T. B. K., Mukherjee, Supratim, Pillay, Manoj, Perevalova, Anna A., Ivanova, Natalia N., Woyke, Tanja, Kyrpides, Nikos C., & Mukhopadhyay, Biswarup. Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533 T , a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia. United States. doi:10.1128/genomeA.00078-17.
Susanti, Dwi, Johnson, Eric F., Lapidus, Alla, Han, James, Reddy, T. B. K., Mukherjee, Supratim, Pillay, Manoj, Perevalova, Anna A., Ivanova, Natalia N., Woyke, Tanja, Kyrpides, Nikos C., and Mukhopadhyay, Biswarup. Thu . "Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533 T , a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia". United States. doi:10.1128/genomeA.00078-17. https://www.osti.gov/servlets/purl/1393210.
@article{osti_1393210,
title = {Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533 T , a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia},
author = {Susanti, Dwi and Johnson, Eric F. and Lapidus, Alla and Han, James and Reddy, T. B. K. and Mukherjee, Supratim and Pillay, Manoj and Perevalova, Anna A. and Ivanova, Natalia N. and Woyke, Tanja and Kyrpides, Nikos C. and Mukhopadhyay, Biswarup},
abstractNote = {Desulfurococcus amylolyticusZ-533T, a hyperthermophilic crenarcheon, ferments peptide and starch, generating acetate, isobutyrate, isovalerate, CO2, and hydrogen. UnlikeD. amylolyticusZ-1312, it cannot use cellulose and is inhibited by hydrogen. The reported draft genome sequence ofD. amylolyticusZ-533Twill help to understand the molecular basis for these differences.},
doi = {10.1128/genomeA.00078-17},
journal = {Genome Announcements},
issn = {2169-8287},
number = 15,
volume = 5,
place = {United States},
year = {2017},
month = {4}
}

Journal Article:
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