Characterization and Regulation of Aquaporin Genes of Sorghum [Sorghum bicolor (L.) Moench] in Response to Waterlogging Stress

Kadam, Suhas; Abril, Alejandra; Dhanapal, Arun P.; Koester, Robert P.; Vermerris, Wilfred; Jose, Shibu; Fritschi, Felix B.

doi:10.3389/fpls.2017.00862

Title: Characterization and Regulation of Aquaporin Genes of Sorghum [Sorghum bicolor (L.) Moench] in Response to Waterlogging Stress

Journal Article · Tue May 30 00:00:00 EDT 2017 · Frontiers in Plant Science

DOI:https://doi.org/10.3389/fpls.2017.00862· OSTI ID:1389270

Kadam, Suhas ^[1]; Abril, Alejandra ^[2]; Dhanapal, Arun P. ^[1]; Koester, Robert P. ^[1]; Vermerris, Wilfred ^[3]; Jose, Shibu ^[4]; Fritschi, Felix B. ^[1]

Univ. of Missouri, Columbia, MO (United States). Division of Plant Sciences
Univ. of Florida, Gainesville, FL (United States)
Univ. of Florida, Gainesville, FL (United States). Inst. of Food Agricultural Sciences, Univ. of Florida Genetics Inst.
Univ. of Missouri, Columbia, MO (United States). Center for Agroforestry

Waterlogging is a significant environmental constraint to crop production, and a better understanding of plant responses is critical for the improvement of crop tolerance to waterlogged soils. Aquaporins (AQPs) are a class of channel-forming proteins that play an important role in water transport in plants. This study aimed to examine the regulation of AQP genes under waterlogging stress and to characterize the genetic variability of AQP genes in sorghum (Sorghum bicolor). Transcriptional profiling of AQP genes in response to waterlogging stress in nodal root tips and nodal root basal regions of two tolerant and two sensitive sorghum genotypes at 18 and 96 h after waterlogging stress imposition revealed significant gene-specific pattern with regard to genotype, root tissue sample, and time point. For some tissue sample and time point combinations, PIP2-6, PIP2-7, TIP2-2, TIP4-4, and TIP5-1 expression was differentially regulated in tolerant compared to sensitive genotypes. The differential response of these AQP genes suggests that they may play a tissue specific role in mitigating waterlogging stress. Genetic analysis of sorghum revealed that AQP genes were clustered into the same four subfamilies as in maize (Zea mays) and rice (Oryza sativa) and that residues determining the AQP channel specificity were largely conserved across species. Single nucleotide polymorphism (SNP) data from 50 sorghum accessions were used to build an AQP gene-based phylogeny of the haplotypes. Phylogenetic analysis based on single nucleotide polymorphisms of sorghum AQP genes placed the tolerant and sensitive genotypes used for the expression study in distinct groups. Expression analyses suggested that selected AQPs may play a pivotal role in sorghum tolerance to water logging stress. Further experimentation is needed to verify their role and to leverage phylogenetic analyses and AQP expression data to improve waterlogging tolerance in sorghum.

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Research Organization:: Univ. of Florida, Gainesville, FL (United States)

Sponsoring Organization:: USDOE Office of Energy Efficiency and Renewable Energy (EERE), Transportation Office. Bioenergy Technologies Office; USDOE Office of International Affairs (IA)

Grant/Contract Number:: PI0000031

OSTI ID:: 1389270

Alternate ID(s):: OSTI ID: 1767994

Journal Information:: Frontiers in Plant Science, Vol. 8; ISSN 1664-462X

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 31 works

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Genomic patterns of structural variation among diverse genotypes of Sorghum bicolor and a potential role for deletions in local adaptation

Journal Article · Wed May 05 00:00:00 EDT 2021 · G3 · OSTI ID:1389270

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Genomic dissection of anthracnose resistance response in sorghum [Sorghum bicolor (L.) Moench]

Technical Report · Tue Sep 01 00:00:00 EDT 2015 · OSTI ID:1389270

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Related Subjects

60 APPLIED LIFE SCIENCES
sorghum
waterlogging
aquaporin
expression
haplotypes
phylogenetic
sorghum
waterlogging
aquaporin
expression
haplotypes
phylogenetic

Title: Characterization and Regulation of Aquaporin Genes of Sorghum [Sorghum bicolor (L.) Moench] in Response to Waterlogging Stress

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