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Title: Atomic detail visualization of photosynthetic membranes with GPU-accelerated ray tracing

Journal Article · · Parallel Computing
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Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Energy Frontier Research Centers (EFRC) (United States). Photosynthetic Antenna Research Center (PARC)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
DOE Contract Number:
SC0001035
OSTI ID:
1387851
Journal Information:
Parallel Computing, Vol. 55, Issue C; Related Information: PARC partners with Washington University in St. Louis (lead); University of California, Riverside; University of Glasgow, UK; Los Alamos National Laboratory; University of New Mexico; New Mexico Corsortium; North Carolina State University; Northwestern University; Oak Ridge National Laboratory; University of Pennsylvania; Sandia National Laboratories; University of Sheffield, UK; ISSN 0167-8191
Publisher:
Elsevier
Country of Publication:
United States
Language:
English

References (17)

Comparing Photosynthetic and Photovoltaic Efficiencies and Recognizing the Potential for Improvement journal May 2011
Förster Energy Transfer Theory as Reflected in the Structures of Photosynthetic Light‐Harvesting Systems journal February 2011
Integration of energy and electron transfer processes in the photosynthetic membrane of Rhodobacter sphaeroides journal October 2014
Atomic-level structural and functional model of a bacterial photosynthetic membrane vesicle journal September 2007
VMD: Visual molecular dynamics journal February 1996
Excited state dynamics in photosynthetic reaction center and light harvesting complex 1 journal August 2012
Identification of Ubiquinol Binding Motifs at the Q o -Site of the Cytochrome bc 1 Complex journal November 2014
Domain Motion of Individual F 1 -ATPase β-Subunits during Unbiased Molecular Dynamics Simulations journal June 2011
Scalable molecular dynamics with NAMD journal January 2005
GPU-accelerated analysis and visualization of large structures solved by molecular dynamics flexible fitting journal January 2014
Light Harvesting by Lamellar Chromatophores in Rhodospirillum photometricum journal June 2014
Electrostatics of nanosystems: Application to microtubules and the ribosome journal August 2001
Electron transfer and spin exchange contributing to the magnetic field dependence of the primary photochemical reaction of bacterial photosynthesis journal May 1978
The crystal structure of the light-harvesting complex II (B800–850) from Rhodospirillum molischianum journal May 1996
Excitons and excitation transfer in the photosynthetic unit of purple bacteria journal February 1998
Open Quantum Dynamics Calculations with the Hierarchy Equations of Motion on Parallel Computers journal July 2012
ATOMLLL: ATOMS with shading and highlights journal August 1979

Cited By (8)

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Identification of novel inhibitor of protein tyrosine phosphatases delta: structure-based pharmacophore modeling, virtual screening, flexible docking, molecular dynamics simulation, and post-molecular dynamics analysis journal October 2019
Pyrite: A blender plugin for visualizing molecular dynamics simulations using industry-standard rendering techniques: Pyrite: Visualizing MD Simulations in Blender journal December 2017
Molecular dynamics simulation of the nanosecond pulsed electric field effect on kinesin nanomotor journal December 2019
Identification of novel inhibitor of protein tyrosine phosphatases delta: structure-based pharmacophore modeling, virtual screening, flexible docking, molecular dynamics simulation, and post-molecular dynamics analysis text January 2019
Identification of novel inhibitor of protein tyrosine phosphatases delta: structure-based pharmacophore modeling, virtual screening, flexible docking, molecular dynamics simulation, and post-molecular dynamics analysis text January 2019

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Related Subjects

solar (fuels)
photosynthesis (natural and artificial)
biofuels (including algae and biomass)
bio-inspired
charge transport
membrane
synthesis (novel materials)
synthesis (self-assembly)