Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

Shi, Cheng-Ying; Yang, Hua; Wei, Chao-Ling; Yu, Oliver; Zhang, Zheng-Zhu; Jiang, Chang-Jun; Sun, Jun; Li, Ye-Yun; Chen, Qi; Xia, Tao; Wan, Xiao-Chun

doi:10.1186/1471-2164-12-131

Title: Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

Journal Article · Mon Feb 28 00:00:00 EST 2011 · BMC Genomics

DOI:https://doi.org/10.1186/1471-2164-12-131· OSTI ID:1380381

Shi, Cheng-Ying; Yang, Hua; Wei, Chao-Ling; Yu, Oliver; Zhang, Zheng-Zhu; Jiang, Chang-Jun; Sun, Jun; Li, Ye-Yun; Chen, Qi; Xia, Tao; Wan, Xiao-Chun

Cite

Export

Save

Research Organization:: Energy Frontier Research Centers (EFRC) (United States). Center for Advanced Biofuel Systems (CABS)

Sponsoring Organization:: USDOE Office of Science (SC), Basic Energy Sciences (BES)

DOE Contract Number:: SC0001295

OSTI ID:: 1380381

Journal Information:: BMC Genomics, Vol. 12, Issue 1; Related Information: CABS partners with the Donald Danforth Plant Science Center (lead); Michigan State University; New Mexico Consortium; University of Nebraska; University of Missouri – St. Louis; Washington State University; ISSN 1471-2164

Publisher:: Springer

Country of Publication:: United States

Language:: English

References (29)

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing Nagalakshmi, U.; Wang, Z.; Waern, K. Science, Vol. 320, Issue 5881 https://doi.org/10.1126/science.1158441	journal	June 2008
Stem cell transcriptome profiling via massive-scale mRNA sequencing Cloonan, Nicole; Forrest, Alistair R. R.; Kolle, Gabriel Nature Methods, Vol. 5, Issue 7 https://doi.org/10.1038/nmeth.1223	journal	May 2008
Mapping and quantifying mammalian transcriptomes by RNA-Seq Mortazavi, Ali; Williams, Brian A.; McCue, Kenneth Nature Methods, Vol. 5, Issue 7, p. 621-628 https://doi.org/10.1038/nmeth.1226	journal	May 2008
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays Marioni, J. C.; Mason, C. E.; Mane, S. M. Genome Research, Vol. 18, Issue 9 https://doi.org/10.1101/gr.079558.108	journal	July 2008
Gene Ontology: tool for the unification of biology Ashburner, Michael; Ball, Catherine A.; Blake, Judith A. Nature Genetics, Vol. 25, Issue 1 https://doi.org/10.1038/75556	journal	May 2000
Tea polyphenols for health promotion Khan, Naghma; Mukhtar, Hasan Life Sciences, Vol. 81, Issue 7 https://doi.org/10.1016/j.lfs.2007.06.011	journal	July 2007
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing Vera, J. Cristobal; Wheat, Christopher W.; Fescemyer, Howard W. Molecular Ecology, Vol. 17, Issue 7 https://doi.org/10.1111/j.1365-294X.2008.03666.x	journal	April 2008
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research Conesa, A.; Gotz, S.; Garcia-Gomez, J. M. Bioinformatics, Vol. 21, Issue 18 https://doi.org/10.1093/bioinformatics/bti610	journal	August 2005
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets Pertea, G.; Huang, X.; Liang, F. Bioinformatics, Vol. 19, Issue 5 https://doi.org/10.1093/bioinformatics/btg034	journal	March 2003
InterPro: the integrative protein signature database Hunter, S.; Apweiler, R.; Attwood, T. K. Nucleic Acids Research, Vol. 37, Issue Database https://doi.org/10.1093/nar/gkn785	journal	January 2009
Applications of New Sequencing Technologies for Transcriptome Analysis Morozova, Olena; Hirst, Martin; Marra, Marco A. Annual Review of Genomics and Human Genetics, Vol. 10, Issue 1 https://doi.org/10.1146/annurev-genom-082908-145957	journal	September 2009
De novo assembly of human genomes with massively parallel short read sequencing Li, R.; Zhu, H.; Ruan, J. Genome Research, Vol. 20, Issue 2 https://doi.org/10.1101/gr.097261.109	journal	December 2009
CAP3: A DNA Sequence Assembly Program Huang, X. Genome Research, Vol. 9, Issue 9 https://doi.org/10.1101/gr.9.9.868	journal	September 1999
Gene Discovery in dbEST Boguski, Mark S.; Tolstoshev, Carolyn M.; Bassett, Douglas E. Science, Vol. 265, Issue 5181 https://doi.org/10.1126/science.8091218	journal	September 1994
De novo characterization of a whitefly transcriptome and analysis of its gene expression during development Wang, Xiao-Wei; Luan, Jun-Bo; Li, Jun-Min BMC Genomics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2164-11-400	journal	January 2010
Functional Classification of Amino Acid Decarboxylases from the Alanine Racemase Structural Family by Phylogenetic Studies Kidron, H.; Repo, S.; Johnson, M. S. Molecular Biology and Evolution, Vol. 24, Issue 1 https://doi.org/10.1093/molbev/msl133	journal	October 2006
Sequence census methods for functional genomics Wold, Barbara; Myers, Richard M. Nature Methods, Vol. 5, Issue 1 https://doi.org/10.1038/nmeth1157	journal	December 2007
A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome Sultan, M.; Schulz, M. H.; Richard, H. Science, Vol. 321, Issue 5891 https://doi.org/10.1126/science.1160342	journal	August 2008
RNA-Seq: a revolutionary tool for transcriptomics Wang, Zhong; Gerstein, Mark; Snyder, Michael Nature Reviews Genetics, Vol. 10, Issue 1 https://doi.org/10.1038/nrg2484	journal	January 2009
Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx Meyer, Eli; Aglyamova, Galina V.; Wang, Shi BMC Genomics, Vol. 10, Issue 1 https://doi.org/10.1186/1471-2164-10-219	journal	January 2009
Phenylalanine ammonia-lyase (PAL) and cinnamate 4-hydroxylase (C4H) and catechins (flavan-3-ols) accumulation in tea Singh, Kashmir; Kumar, Sanjay; Rani, Arti Functional & Integrative Genomics, Vol. 9, Issue 1 https://doi.org/10.1007/s10142-008-0092-9	journal	August 2008
The COG database: new developments in phylogenetic classification of proteins from complete genomes Tatusov, R. L. Nucleic Acids Research, Vol. 29, Issue 1 https://doi.org/10.1093/nar/29.1.22	journal	January 2001
The KEGG resource for deciphering the genome Kanehisa, M. Nucleic Acids Research, Vol. 32, Issue 90001 https://doi.org/10.1093/nar/gkh063	journal	January 2004
The Pfam protein families database Finn, Robert D.; Mistry, Jaina; Tate, John Nucleic Acids Research, Vol. 38, Issue suppl_1 https://doi.org/10.1093/nar/gkp985	journal	November 2009
The role of glutamine synthetase and glutamate dehydrogenase in nitrogen assimilation and possibilities for improvement in the nitrogen utilization of crops Miflin, Ben J.; Habash, Dimah Z. Journal of Experimental Botany, Vol. 53, Issue 370, p. 979-987 https://doi.org/10.1093/jexbot/53.370.979	journal	April 2002
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis Lister, Ryan; O'Malley, Ronan C.; Tonti-Filippini, Julian Cell, Vol. 133, Issue 3 https://doi.org/10.1016/j.cell.2008.03.029	journal	May 2008
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution Wilhelm, Brian T.; Marguerat, Samuel; Watt, Stephen Nature, Vol. 453, Issue 7199 https://doi.org/10.1038/nature07002	journal	May 2008
Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing Morin, Ryan D.; Bainbridge, Matthew; Fejes, Anthony BioTechniques, Vol. 45, Issue 1 https://doi.org/10.2144/000112900	journal	July 2008
Flavonoid Biosynthesis. A Colorful Model for Genetics, Biochemistry, Cell Biology, and Biotechnology Winkel-Shirley, Brenda Plant Physiology, Vol. 126, Issue 2 https://doi.org/10.1104/pp.126.2.485	journal	June 2001

Similar Records

Metabolome and RNA-seq Analysis of Responses to Nitrogen Deprivation and Resupply in Tea Plant (Camellia sinensis) Roots

Journal Article · Fri Aug 26 00:00:00 EDT 2022 · Frontiers in Plant Science · OSTI ID:1380381

Xu, Wenluan; Li, Jing; Zhang, Luyu; +8 more

In vitro activity of Camellia sinensis (green tea) against trophozoites and cysts of Acanthamoeba castellanii

Journal Article · Sat Aug 01 00:00:00 EDT 2020 · International Journal for Parasitology: Drugs and Drug Resistance · OSTI ID:1380381

Fakae, Lenu B.; Stevenson, Carl W.; Zhu, Xing-Quan; +1 more

Interactive effects of drought severity and simulated herbivory on tea (Camellia sinensis) volatile and non-volatile metabolites

Journal Article · Tue Jan 01 00:00:00 EST 2019 · Environmental and Experimental Botany · OSTI ID:1380381

Scott, Eric R.; Li, Xin; Kfoury, Nicole; +8 more

Related Subjects

catalysis (homogeneous)
catalysis (heterogeneous)
solar (fuels)
photosynthesis (natural and artificial)
biofuels (including algae and biomass)
bio-inspired
charge transport
carbon capture
synthesis (novel materials)

Title: Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

Citation Formats

References (29)

Similar Records

Related Subjects