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Title: High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea

Abstract

Nakamurella lactea DLS-10 T , isolated from rock in Korea, is one of the four type strains of the genus Nakamurella. In this study, we describe the high quality draft genome of N. lactea DLS-10 T and its annotation. A summary of phenotypic data collected from previously published studies was also included. The genome of strain DLS-10 T presents a size of 5.82 Mpb, 5100 protein coding genes, and a C + G content of 68.9%. Based on the genome analysis, emended description of N. lactea in terms of G + C content was also proposed.

Authors:
 [1];  [2];  [1];  [1];  [3];  [4];  [5];  [1]
  1. Newcastle Univ., Tyne (United Kingdom). School of Biology
  2. Leibniz Inst. for German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  3. Helmholtz Centre for Infection Research, Braunschweig (Germany). Central Facility for Microscopy
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Biological Sciences
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1379675
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 12; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; frankineae; rare actinobacteria; nakamurellaceae; bioactive natural product; next generation sequencing

Citation Formats

Nouioui, Imen, Göker, Markus, Carro, Lorena, Montero-Calasanz, Maria del Carmen, Rohde, Manfred, Woyke, Tanja, Kyrpides, Nikos C., and Klenk, Hans-Peter. High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea. United States: N. p., 2017. Web. doi:10.1186/s40793-016-0216-0.
Nouioui, Imen, Göker, Markus, Carro, Lorena, Montero-Calasanz, Maria del Carmen, Rohde, Manfred, Woyke, Tanja, Kyrpides, Nikos C., & Klenk, Hans-Peter. High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea. United States. doi:10.1186/s40793-016-0216-0.
Nouioui, Imen, Göker, Markus, Carro, Lorena, Montero-Calasanz, Maria del Carmen, Rohde, Manfred, Woyke, Tanja, Kyrpides, Nikos C., and Klenk, Hans-Peter. Fri . "High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea". United States. doi:10.1186/s40793-016-0216-0. https://www.osti.gov/servlets/purl/1379675.
@article{osti_1379675,
title = {High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea},
author = {Nouioui, Imen and Göker, Markus and Carro, Lorena and Montero-Calasanz, Maria del Carmen and Rohde, Manfred and Woyke, Tanja and Kyrpides, Nikos C. and Klenk, Hans-Peter},
abstractNote = {Nakamurella lactea DLS-10 T , isolated from rock in Korea, is one of the four type strains of the genus Nakamurella. In this study, we describe the high quality draft genome of N. lactea DLS-10 T and its annotation. A summary of phenotypic data collected from previously published studies was also included. The genome of strain DLS-10 T presents a size of 5.82 Mpb, 5100 protein coding genes, and a C + G content of 68.9%. Based on the genome analysis, emended description of N. lactea in terms of G + C content was also proposed.},
doi = {10.1186/s40793-016-0216-0},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 12,
place = {United States},
year = {Fri Jan 06 00:00:00 EST 2017},
month = {Fri Jan 06 00:00:00 EST 2017}
}

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Cited by: 2 works
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