High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T

Tashkandy, Nisreen; Sabban, Sari; Fakieh, Mohammad; Meier-Kolthoff, Jan P.; Huang, Sixing; Tindall, Brian J.; Rohde, Manfred; Baeshen, Mohammed N.; Baeshen, Nabih A.; Lapidus, Alla; Copeland, Alex; Pillay, Manoj; Reddy, T. B. K.; Huntemann, Marcel; Pati, Amrita; Ivanova, Natalia; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Klenk, Hans-Peter; Kyrpides, Nikos C.; Hahnke, Richard L.

doi:10.1186/s40793-016-0159-5

Title: High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T

Journal Article · Thu Jun 16 00:00:00 EDT 2016 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-016-0159-5· OSTI ID:1618968

Tashkandy, Nisreen; Sabban, Sari; Fakieh, Mohammad; Meier-Kolthoff, Jan P.; Huang, Sixing; Tindall, Brian J.; Rohde, Manfred; Baeshen, Mohammed N.; Baeshen, Nabih A.; Lapidus, Alla; Copeland, Alex; Pillay, Manoj; Reddy, T. B. K.; Huntemann, Marcel; Pati, Amrita; Ivanova, Natalia; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Klenk, Hans-Peter more »

Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5 ^T (DSM 17707 ^T ) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5 ^T is part of the Genomic Encyclopedia of Bacteria and Archaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5 ^T has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5 ^T . Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5 ^T feeds rather on proteins than saccharides and lipids.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1618968

Alternate ID(s):: OSTI ID: 1379401

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Vol. 11 Journal Issue: 1; ISSN 1944-3277

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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Cited by: 2 works

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59 BASIC BIOLOGICAL SCIENCES
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Title: High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T

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