Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

Gutierrez, Tony; Whitman, William B.; Huntemann, Marcel; Copeland, Alex; Chen, Amy; Kyrpides, Nikos; Markowitz, Victor; Pillay, Manoj; Ivanova, Natalia; Mikhailova, Natalia; Ovchinnikova, Galina; Andersen, Evan; Pati, Amrita; Stamatis, Dimitrios; Reddy, T. B. K.; Ngan, Chew Yee; Chovatia, Mansi; Daum, Chris; Shapiro, Nicole; Cantor, Michael N.; Woyke, Tanja

doi:10.1128/genomeA.00765-16

Title: Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

Journal Article · Thu Aug 25 00:00:00 EDT 2016 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.00765-16· OSTI ID:1786482

Gutierrez, Tony ^[1]; Whitman, William B. ^[2]; Huntemann, Marcel ^[3]; Copeland, Alex ^[3]; Chen, Amy ^[3]; Kyrpides, Nikos ^[3]; Markowitz, Victor ^[3]; Pillay, Manoj ^[3]; Ivanova, Natalia ^[3]; Mikhailova, Natalia ^[3]; Ovchinnikova, Galina ^[3]; Andersen, Evan ^[3]; Pati, Amrita ^[3]; Stamatis, Dimitrios ^[3]; Reddy, T. B. K. ^[3]; Ngan, Chew Yee ^[3]; Chovatia, Mansi ^[3]; Daum, Chris ^[3]; Shapiro, Nicole ^[3]; Cantor, Michael N. ^[3] more »

School of Life Sciences, Heriot-Watt University, Edinburgh, United Kingdom
Department of Microbiology, University of Georgia, Athens, Georgia, USA
DOE Joint Genome Institute, Walnut Creek, California, USA

Arenibacter algicolastrain TG409 was isolated fromSkeletonema costatumand exhibits the ability to utilize polycyclic aromatic hydrocarbons as sole sources of carbon and energy. Here, we present the genome sequence of this strain, which is 5,550,230 bp with 4,722 genes and an average G+C content of 39.7%.

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Research Organization:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1786482

Alternate ID(s):: OSTI ID: 1378995

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Vol. 4 Journal Issue: 4; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (9)

Polycyclic Aromatic Hydrocarbon Degradation of Phytoplankton-Associated Arenibacter spp. and Description of Arenibacter algicola sp. nov., an Aromatic Hydrocarbon-Degrading Bacterium Gutierrez, Tony; Rhodes, Glenn; Mishamandani, Sara Applied and Environmental Microbiology, Vol. 80, Issue 2 https://doi.org/10.1128/AEM.03104-13	journal	November 2013
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data Chin, Chen-Shan; Alexander, David H.; Marks, Patrick Nature Methods, Vol. 10, Issue 6 https://doi.org/10.1038/nmeth.2474	journal	May 2013
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence Lowe, Todd M.; Eddy, Sean R. Nucleic Acids Research, Vol. 25, Issue 5 https://doi.org/10.1093/nar/25.5.0955	journal	March 1997
IMG ER: a system for microbial genome annotation expert review and curation Markowitz, Victor M.; Mavromatis, Konstantinos; Ivanova, Natalia N. Bioinformatics, Vol. 25, Issue 17 https://doi.org/10.1093/bioinformatics/btp393	journal	June 2009
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos Standards in Genomic Sciences, Vol. 10, Issue 1 https://doi.org/10.1186/s40793-015-0077-y	journal	October 2015
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB Pruesse, E.; Quast, C.; Knittel, K. Nucleic Acids Research, Vol. 35, Issue 21 https://doi.org/10.1093/nar/gkm864	journal	November 2007
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia Nature Methods, Vol. 7, Issue 6 https://doi.org/10.1038/nmeth.1457	journal	May 2010
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification Reddy, T. B. K.; Thomas, Alex D.; Stamatis, Dimitri Nucleic Acids Research, Vol. 43, Issue D1 https://doi.org/10.1093/nar/gku950	journal	October 2014

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Title: Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton

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