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Title: High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1 T Isolated from Great Boiling Spring, Nevada

Journal Article · · Genome Announcements
 [1];  [1];  [1];  [1];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2];  [2] more »;  [3];  [4] « less
  1. School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, Nevada, USA
  2. Department of Energy Joint Genome Institute, Walnut Creek, California, USA
  3. Department of Biology, California State University, San Bernardino, California, USA
  4. School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, Nevada, USA, Nevada Institute of Personalized Medicine, University of Nevada, Las Vegas, Las Vegas, Nevada, USA
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The draft genome of Thermocrinis jamiesonii GBS1T is 1,315,625 bp in 10 contigs and encodes 1,463 predicted genes. The presence of sox genes and various glycoside hydrolases and the absence of uptake NiFe hydrogenases (hyaB) are consistent with a requirement for thiosulfate and suggest the ability to use carbohydrate polymers.

Research Organization:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1786440
Alternate ID(s):
OSTI ID: 1378989
Journal Information:
Genome Announcements, Journal Name: Genome Announcements Vol. 4 Journal Issue: 5; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (13)

Community Microrespirometry and Molecular Analyses Reveal a Diverse Energy Economy in Great Boiling Spring and Sandy's Spring West in the U.S. Great Basin journal March 2013
Prokaryotic sulfur oxidation journal June 2005
Signature Lipids and Stable Carbon Isotope Analyses of Octopus Spring Hyperthermophilic Communities Compared with Those of Aquificales Representatives journal November 2001
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4) journal October 2015
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
Thermocrinis minervae sp. nov., a hydrogen- and sulfur-oxidizing, thermophilic member of the Aquificales from a Costa Rican terrestrial hot spring journal August 2009
dbCAN: a web resource for automated carbohydrate-active enzyme annotation journal May 2012
IMG 4 version of the integrated microbial genomes comparative analysis system journal October 2013
Ecological Aspects of the Distribution of Different Autotrophic CO 2 Fixation Pathways journal January 2011
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
High-quality draft assemblies of mammalian genomes from massively parallel sequence data journal December 2010
Spatial and temporal variability of biomarkers and microbial diversity reveal metabolic and community flexibility in Streamer Biofilm Communities in the Lower Geyser Basin, Yellowstone National Park journal August 2013
Thermocrinis jamiesonii sp. nov., a thiosulfate-oxidizing, autotropic thermophile isolated from a geothermal spring journal December 2015

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