Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos

Tiwari, Ravi; Howieson, John; Yates, Ron; Tian, Rui; Held, Britanny; Tapia, Roxanne; Han, Cliff; Seshadri, Rekha; Reddy, T. B.  K.; Huntemann, Marcel; Pati, Amrita; Woyke, Tanja; Markowitz, Victor; Ivanova, Natalia; Kyrpides, Nikos; Reeve, Wayne

doi:10.1186/s40793-015-0115-9

Title: Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos

Journal Article · Mon Nov 30 00:00:00 EST 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0115-9· OSTI ID:1255537

Tiwari, Ravi ^[1]; Howieson, John ^[1]; Yates, Ron ^[2]; Tian, Rui ^[1]; Held, Britanny ^[3]; Tapia, Roxanne ^[3]; Han, Cliff ^[3]; Seshadri, Rekha ^[4]; Reddy, T. B. K. ^[4]; Huntemann, Marcel ^[4]; Pati, Amrita ^[4]; Woyke, Tanja ^[4]; Markowitz, Victor ^[5]; Ivanova, Natalia ^[4]; Kyrpides, Nikos ^[6]; Reeve, Wayne ^[1]

Murdoch Univ., Murdoch (Australia). Centre for Rhizobium Studies
Murdoch Univ., Murdoch (Australia). Centre for Rhizobium Studies; Department of Agriculture and Food, South Perth (Australia)
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz University, Jeddah (Saudi Arabia)

Â© 2015 Tiwari et al. Bradyrhizobium sp. WSM1253 is a novel N 2 -fixing bacterium isolated from a root nodule of the herbaceous annual legume Ornithopus compressus that was growing on the Greek Island of Sifnos. WSM1253 emerged as a strain of interest in an Australian program that was selecting inoculant quality bradyrhizobial strains for inoculation of Mediterranean species of lupins (Lupinus angustifolius, L. princei, L. atlanticus, L. pilosus). In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 8,719,808 bp genome has a G + C content of 63.09 % with 71 contigs arranged into two scaffolds. The assembled genome contains 8,432 protein-coding genes, 66 RNA genes and a single rRNA operon. This improved-high-quality draft rhizobial genome is one of 20 sequenced through a DOE Joint Genome Institute 2010 Community Sequencing Project.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; AC52-07NA27344; AC02-06NA25396

OSTI ID:: 1255537

Alternate ID(s):: OSTI ID: 1378661

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 2 works

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Phylogeny and Phylogeography of Rhizobial Symbionts Nodulating Legumes of the Tribe Genisteae Stępkowski, Tomasz; Banasiewicz, Joanna; Granada, Camille Genes, Vol. 9, Issue 3 https://doi.org/10.3390/genes9030163	journal	March 2018

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Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos [Supplemental Data] Tiwari, Ravi; Howieson, John; Yates, Ron https://doi.org/10.6084/m9.figshare.c.3610973 The current record is supplemented by this figure	figure	November 2015
Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos [Supplemental Data] Tiwari, Ravi; Howieson, John; Yates, Ron https://doi.org/10.6084/m9.figshare.c.3610973.v1 The current record is supplemented by this figure	figure	November 2015
Additional file 1: Table S1. of Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos Tiwari, Ravi; Howieson, John; Yates, Ron https://doi.org/10.6084/m9.figshare.c.3610973_d1 The current record is supplemented by this text	text	January 2015
Additional file 1: Table S1. of Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos Tiwari, Ravi; Howieson, John; Yates, Ron https://doi.org/10.6084/m9.figshare.c.3610973_d1.v1 The current record is supplemented by this dataset	dataset	November 2015