Metagenome to phenome approach enables isolation and genomics characterization of Kalamiella piersonii gen. nov., sp. nov. from the International Space Station
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journal
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April 2019 |
High-quality genome sequences of uncultured microbes by assembly of read clouds
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journal
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October 2018 |
Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes
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journal
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July 2018 |
Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome
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journal
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July 2018 |
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes
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journal
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January 2019 |
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
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journal
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February 2018 |
Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota
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journal
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July 2018 |
Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments
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journal
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November 2018 |
Mixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities
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journal
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February 2019 |
Microbial abundance, activity and population genomic profiling with mOTUs2
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journal
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March 2019 |
Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem
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journal
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October 2018 |
Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota
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journal
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March 2019 |
Bacterial fermentation and respiration processes are uncoupled in anoxic permeable sediments
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journal
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March 2019 |
New insights from uncultivated genomes of the global human gut microbiome
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journal
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March 2019 |
Reaction parameter comparison and optimization of multiple displacement amplification
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journal
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January 2020 |
Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
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journal
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June 2018 |
MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes
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journal
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June 2018 |
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
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journal
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November 2018 |
A metagenomic window into the 2-km-deep terrestrial subsurface aquifer revealed multiple pathways of organic matter decomposition
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journal
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August 2018 |
BioSamples database: an updated sample metadata hub
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journal
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November 2018 |
2038 – When microbes rule the Earth
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journal
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October 2018 |
Genome analysis of sponge symbiont ‘ Candidatus Halichondribacter symbioticus’ shows genomic adaptation to a host‐dependent lifestyle
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journal
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November 2019 |
Spatial Distribution and Diverse Metabolic Functions of Lignocellulose-Degrading Uncultured Bacteria as Revealed by Genome-Centric Metagenomics
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journal
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July 2018 |
Composite Metagenome-Assembled Genomes Reduce the Quality of Public Genome Repositories
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journal
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June 2019 |
Comparative Genomics of Cyanobacterial Symbionts Reveals Distinct, Specialized Metabolism in Tropical Dysideidae Sponges
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journal
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May 2019 |
Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity
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journal
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September 2019 |
Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
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journal
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March 2019 |
Genomic Evidence for Simultaneous Optimization of Transcription and Translation through Codon Variants in the pmoCAB Operon of Type Ia Methanotrophs
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journal
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July 2019 |
Theoretical and Simulation-Based Investigation of the Relationship between Sequencing Effort, Microbial Community Richness, and Diversity in Binning Metagenome-Assembled Genomes
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journal
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September 2019 |
Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly
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journal
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December 2019 |
CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes
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journal
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December 2018 |
Assembly of hundreds of novel bacterial genomes from the chicken caecum
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journal
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February 2020 |
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis
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journal
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September 2018 |
A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments
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journal
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September 2018 |
Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake
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journal
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September 2018 |
Genomic and metagenomic insights into the microbial community of a thermal spring
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journal
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January 2019 |
Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)
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journal
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April 2019 |
Impact of plants on the diversity and activity of methylotrophs in soil
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journal
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March 2020 |
VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
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journal
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June 2020 |
Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages
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journal
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September 2019 |
Parasite microbiome project: Grand challenges
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journal
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October 2019 |
Characterization of Core Microbiomes and Functional Profiles of Mesophilic Anaerobic Digesters Fed With Chlorella vulgaris Green Microalgae and Maize Silage
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journal
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October 2019 |
Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla
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journal
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November 2017 |
Hydrogen-Fueled Microbial Pathways in Biogas Upgrading Systems Revealed by Genome-Centric Metagenomics
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journal
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May 2018 |
Uncovering the Uncultivated Majority in Antarctic Soils: Toward a Synergistic Approach
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journal
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February 2019 |
Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence
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journal
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June 2018 |
Current Status and Potential Applications of Underexplored Prokaryotes
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journal
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October 2019 |
Freshwater carbon and nutrient cycles revealed through reconstructed population genomes
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journal
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January 2018 |
JGI QC impact on assembly, binning, phylogenomics, and functional analysis
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dataset
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January 2021 |
MiSet RFC Standards: Defining a Universal Minimum Set of Standards Required for Reproducibility and Rigor in Research Flow Cytometry Experiments
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journal
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November 2019 |
Microbial genomes retrieved from High Arctic lake sediments encode for adaptation to cold and oligotrophic environments
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journal
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January 2020 |
Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community
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journal
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June 2017 |
Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles
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journal
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October 2018 |
Taxonomic and functional heterogeneity of the gill microbiome in a symbiotic coastal mangrove lucinid species
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journal
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December 2018 |
Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere
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journal
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February 2019 |
Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis
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journal
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December 2018 |
The distinction of CPR bacteria from other bacteria based on protein family content
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journal
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September 2019 |
Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea
|
journal
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October 2019 |
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
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journal
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December 2019 |
Expanding anaerobic alkane metabolism in the domain of Archaea
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journal
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March 2019 |
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2
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journal
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June 2019 |
A new genomic blueprint of the human gut microbiota
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journal
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February 2019 |
Giant virus diversity and host interactions through global metagenomics
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journal
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January 2020 |
A human gut bacterial genome and culture collection for improved metagenomic analyses
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journal
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February 2019 |
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
|
journal
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August 2019 |
Recoding of the selenocysteine UGA codon by cysteine in the presence of a non-canonical tRNA Cys and elongation factor SelB
|
journal
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November 2017 |
An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia
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journal
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July 2019 |
CAMITAX: Taxon labels for microbial genomes
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journal
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January 2020 |
IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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journal
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October 2018 |
Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors
|
journal
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June 2020 |
Advantages outweigh concerns about using genome sequence as type material for prokaryotic taxonomy
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journal
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August 2019 |
Novel bioactive natural products from bacteria via bioprospecting, genome mining and metabolic engineering
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journal
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March 2019 |
Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland
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journal
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November 2018 |
Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons
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journal
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October 2019 |
Genome-Resolved Metagenomics Extends the Environmental Distribution of the Verrucomicrobia Phylum to the Deep Terrestrial Subsurface
|
journal
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December 2019 |
Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader ‘Candidatus Leucobacter sulfamidivorax’ strain GP
|
journal
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November 2019 |
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
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journal
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August 2019 |
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
|
journal
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October 2019 |
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
|
journal
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December 2019 |
Integrated multi-omic analysis of host-microbiota interactions in acute oak decline
|
journal
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January 2018 |
Metagenomic investigation of vestimentiferan tubeworm endosymbionts from Mid-Cayman Rise reveals new insights into metabolism and diversity
|
journal
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January 2018 |
Integrated omics: tools, advances and future approaches
|
journal
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January 2019 |
New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
|
journal
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July 2018 |
Genomic Description of ‘Candidatus Abyssubacteria,’ a Novel Subsurface Lineage Within the Candidate Phylum Hydrogenedentes
|
journal
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August 2018 |
Genomic Insight Into the Predominance of Candidate Phylum Atribacteria JS1 Lineage in Marine Sediments
|
journal
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November 2018 |
Impact of BBDuk metagenomic read trimming and decontamination
|
dataset
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January 2021 |
Rhizosphere microbiome structure alters to enable wilt resistance in tomato
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journal
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October 2018 |
Comparative metatranscriptomics reveals extracellular electron transfer pathways conferring microbial adaptivity to surface redox potential changes
|
journal
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July 2018 |
Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution
|
journal
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April 2019 |
In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes
|
journal
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July 2019 |
Genome analysis of a thermophilic exopolysaccharide-producing bacterium - Geobacillus sp. WSUCF1
|
journal
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February 2019 |
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
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journal
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February 2019 |
Struo: a pipeline for building custom databases for common metagenome profilers
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journal
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November 2019 |
The European Nucleotide Archive in 2019
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journal
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November 2019 |
VIBRANT: Automated recovery, annotation and curation of microbial viruses, and evaluation of virome function from genomic sequences
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posted_content
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November 2019 |
Elucidating Syntrophic Butyrate-Degrading Populations in Anaerobic Digesters Using Stable-Isotope-Informed Genome-Resolved Metagenomics
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journal
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August 2019 |
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
|
journal
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April 2019 |
Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species
|
journal
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March 2019 |
Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle
|
journal
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July 2018 |
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere
|
journal
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November 2019 |
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
|
journal
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January 2019 |
Taxonomic and functional insights into rock varnish microbiome using shotgun metagenomics
|
journal
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November 2019 |
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment
|
journal
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May 2020 |
Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost
|
journal
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July 2019 |
Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale
|
journal
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May 2020 |
A pipeline for targeted metagenomics of environmental bacteria
|
journal
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February 2020 |
Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
|
journal
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July 2019 |
Niche-directed evolution modulates genome architecture in freshwater Planctomycetes
|
text
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January 2019 |
Genome of the candidate phylum Aminicenantes bacterium from a deep subsurface thermal aquifer revealed its fermentative saccharolytic lifestyle
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journal
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January 2019 |
Genome sequences of horticultural plants: past, present, and future
|
journal
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October 2019 |
Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism
|
journal
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April 2019 |
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
|
journal
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August 2019 |
Computational Framework for High-Quality Production and Large-Scale Evolutionary Analysis of Metagenome Assembled Genomes
|
journal
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October 2019 |
Metabolic relationships of uncultured bacteria associated with the microalgae Gambierdiscus
|
journal
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December 2019 |
Metabolic diversity and co-occurrence of multiple Ferrovum species at an acid mine drainage site
|
journal
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May 2020 |
Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem
|
journal
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February 2020 |
Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics
|
journal
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November 2019 |
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes
|
journal
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November 2017 |
bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes
|
journal
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February 2019 |
The promise and challenge of cancer microbiome research
|
journal
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June 2020 |
Assessment of urban microbiome assemblies with the help of targeted in silico gold standards
|
journal
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October 2018 |
Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota
|
journal
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January 2020 |
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes
|
journal
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June 2020 |
Microbial Community Structure and Functional Potential Along a Hypersaline Gradient
|
journal
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July 2018 |
Oxygen Reductases in Alphaproteobacterial Genomes: Physiological Evolution From Low to High Oxygen Environments
|
journal
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March 2019 |
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
|
journal
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January 2017 |
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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journal
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January 2019 |
Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake
|
text
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January 2018 |
Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov
|
journal
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August 2019 |
Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
|
journal
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March 2019 |
Lignite coal burning seam in the remote Altai Mountains harbors a hydrogen-driven thermophilic microbial community
|
journal
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April 2018 |
High-Quality Draft Single-Cell Genome Sequence Belonging to the Archaeal Candidate Division SA1, Isolated from Nereus Deep in the Red Sea
|
journal
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May 2018 |
Novel Autotrophic Organisms Contribute Significantly to the Internal Carbon Cycling Potential of a Boreal Lake
|
journal
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August 2018 |
Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease
|
journal
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November 2018 |
Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of
Loki
- and
Thorarchaeota
|
journal
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October 2019 |
The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities
|
journal
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February 2020 |
Carbon Assimilation Strategies in Ultrabasic Groundwater: Clues from the Integrated Study of a Serpentinization-Influenced Aquifer
|
journal
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March 2020 |
Dietary Oligosaccharides Attenuate Stress-Induced Disruptions in Immune Reactivity and Microbial B-Vitamin Metabolism
|
journal
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July 2019 |
Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments
|
journal
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December 2018 |
An Expanded Ribosomal Phylogeny of Cyanobacteria Supports a Deep Placement of Plastids
|
journal
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July 2019 |
Genome of a Novel Bacterium “Candidatus Jettenia ecosi” Reconstructed From the Metagenome of an Anammox Bioreactor
|
journal
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October 2019 |
A Bioinformatics Guide to Plant Microbiome Analysis
|
journal
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October 2019 |
Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
|
journal
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January 2020 |