skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Quantifying Reversible Oxidation of Protein Thiols in Photosynthetic Organisms

Authors:
; ; ; ;
Publication Date:
Research Org.:
Energy Frontier Research Centers (EFRC) (United States). Center for Advanced Biofuel Systems (CABS)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
OSTI Identifier:
1369681
DOE Contract Number:  
SC0001295
Resource Type:
Journal Article
Journal Name:
Journal of the American Society for Mass Spectrometry
Additional Journal Information:
Journal Volume: 26; Journal Issue: 4; Related Information: CABS partners with the Donald Danforth Plant Science Center (lead); Michigan State University; New Mexico Consortium; University of Nebraska; University of Missouri – St. Louis; Washington State University; Journal ID: ISSN 1044-0305
Publisher:
American Society for Mass Spectrometry
Country of Publication:
United States
Language:
English

Citation Formats

Slade, William O., Werth, Emily G., McConnell, Evan W., Alvarez, Sophie, and Hicks, Leslie M. Quantifying Reversible Oxidation of Protein Thiols in Photosynthetic Organisms. United States: N. p., 2015. Web. doi:10.1007/s13361-014-1073-y.
Slade, William O., Werth, Emily G., McConnell, Evan W., Alvarez, Sophie, & Hicks, Leslie M. Quantifying Reversible Oxidation of Protein Thiols in Photosynthetic Organisms. United States. doi:10.1007/s13361-014-1073-y.
Slade, William O., Werth, Emily G., McConnell, Evan W., Alvarez, Sophie, and Hicks, Leslie M. Fri . "Quantifying Reversible Oxidation of Protein Thiols in Photosynthetic Organisms". United States. doi:10.1007/s13361-014-1073-y.
@article{osti_1369681,
title = {Quantifying Reversible Oxidation of Protein Thiols in Photosynthetic Organisms},
author = {Slade, William O. and Werth, Emily G. and McConnell, Evan W. and Alvarez, Sophie and Hicks, Leslie M.},
abstractNote = {},
doi = {10.1007/s13361-014-1073-y},
journal = {Journal of the American Society for Mass Spectrometry},
issn = {1044-0305},
number = 4,
volume = 26,
place = {United States},
year = {2015},
month = {2}
}

Works referenced in this record:

Identification and Quantification of S-Nitrosylation by Cysteine Reactive Tandem Mass Tag Switch Assay
journal, November 2011

  • Murray, Christopher I.; Uhrigshardt, Helge; O'Meally, Robert N.
  • Molecular & Cellular Proteomics, Vol. 11, Issue 2
  • DOI: 10.1074/mcp.M111.013441

Redox-regulatory mechanisms induced by oxidative stress in Brassica juncea roots monitored by 2-DE proteomics
journal, February 2011


CysTRAQ — A combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes
journal, January 2012


Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches
journal, May 2009

  • Alvarez, Sophie; Berla, Bertram M.; Sheffield, Jeanne
  • PROTEOMICS, Vol. 9, Issue 9
  • DOI: 10.1002/pmic.200800478

Comprehensive Comparison of iTRAQ and Label-free LC-Based Quantitative Proteomics Approaches Using Two Chlamydomonas reinhardtii Strains of Interest for Biofuels Engineering
journal, December 2011

  • Wang, Hongxia; Alvarez, Sophie; Hicks, Leslie M.
  • Journal of Proteome Research, Vol. 11, Issue 1
  • DOI: 10.1021/pr2008225

DBToolkit: processing protein databases for peptide-centric proteomics
journal, July 2005


Quantitative Analysis of the Intra- and Inter-Individual Variability of the Normal Urinary Proteome
journal, February 2011

  • Nagaraj, Nagarjuna; Mann, Matthias
  • Journal of Proteome Research, Vol. 10, Issue 2
  • DOI: 10.1021/pr100835s

Proteomic Quantification and Site-Mapping of S -Nitrosylated Proteins Using Isobaric iodoTMT Reagents
journal, June 2014

  • Qu, Zhe; Meng, Fanjun; Bomgarden, Ryan D.
  • Journal of Proteome Research, Vol. 13, Issue 7
  • DOI: 10.1021/pr401179v

Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)
journal, July 2011

  • Andrews, Genna L.; Simons, Brigitte L.; Young, J. Bryce
  • Analytical Chemistry, Vol. 83, Issue 13
  • DOI: 10.1021/ac200812d

Detection of reversible protein thiol modifications in tissues
journal, November 2006

  • Rogers, Lynette K.; Leinweber, Barbara L.; Smith, Charles V.
  • Analytical Biochemistry, Vol. 358, Issue 2
  • DOI: 10.1016/j.ab.2006.08.020

Quantitative Label-Free Phosphoproteomics Strategy for Multifaceted Experimental Designs
journal, May 2011

  • Soderblom, Erik J.; Philipp, Melanie; Thompson, J. Will
  • Analytical Chemistry, Vol. 83, Issue 10
  • DOI: 10.1021/ac200213b

Quantifying the global cellular thiol-disulfide status
journal, January 2009

  • Hansen, R. E.; Roth, D.; Winther, J. R.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 2
  • DOI: 10.1073/pnas.0812149106

Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications
journal, December 2013


Addressing Accuracy and Precision Issues in iTRAQ Quantitation
journal, April 2010

  • Karp, Natasha A.; Huber, Wolfgang; Sadowski, Pawel G.
  • Molecular & Cellular Proteomics, Vol. 9, Issue 9
  • DOI: 10.1074/mcp.M900628-MCP200

Targeted Quantitation of Site-Specific Cysteine Oxidation in Endogenous Proteins Using a Differential Alkylation and Multiple Reaction Monitoring Mass Spectrometry Approach
journal, March 2010

  • Held, Jason M.; Danielson, Steven R.; Behring, Jessica B.
  • Molecular & Cellular Proteomics, Vol. 9, Issue 7
  • DOI: 10.1074/mcp.M900643-MCP200

Prediction of high-responding peptides for targeted protein assays by mass spectrometry
journal, January 2009

  • Fusaro, Vincent A.; Mani, D. R.; Mesirov, Jill P.
  • Nature Biotechnology, Vol. 27, Issue 2
  • DOI: 10.1038/nbt.1524

Biopython: freely available Python tools for computational molecular biology and bioinformatics
journal, March 2009


Less label, more free: Approaches in label-free quantitative mass spectrometry
journal, January 2011

  • Neilson, Karlie A.; Ali, Naveid A.; Muralidharan, Sridevi
  • PROTEOMICS, Vol. 11, Issue 4
  • DOI: 10.1002/pmic.201000553

Minimising iTRAQ ratio compression through understanding LC-MS elution dependence and high-resolution HILIC fractionation
journal, May 2011


Parasitic Worms Stimulate Host NADPH Oxidases to Produce Reactive Oxygen Species That Limit Plant Cell Death and Promote Infection
journal, April 2014


The Role of Reactive Oxygen Species in Hormonal Responses
journal, June 2006

  • Kwak, June M.; Nguyen, Vinh; Schroeder, Julian I.
  • Plant Physiology, Vol. 141, Issue 2
  • DOI: 10.1104/pp.106.079004

First Proteomic Study of S-Glutathionylation in Cyanobacteria
journal, September 2014

  • Chardonnet, Solenne; Sakr, Samer; Cassier-Chauvat, Corinne
  • Journal of Proteome Research, Vol. 14, Issue 1
  • DOI: 10.1021/pr500625a

A Comparison of Labeling and Label-Free Mass Spectrometry-Based Proteomics Approaches
journal, July 2009

  • Patel, Vibhuti J.; Thalassinos, Konstantinos; Slade, Susan E.
  • Journal of Proteome Research, Vol. 8, Issue 7
  • DOI: 10.1021/pr900080y

Characterization of reaction conditions providing rapid and specific cysteine alkylation for peptide-based mass spectrometry
journal, January 2013

  • Paulech, Jana; Solis, Nestor; Cordwell, Stuart J.
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1834, Issue 1
  • DOI: 10.1016/j.bbapap.2012.08.002

Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics
journal, January 2006

  • Hendrickson, Erik L.; Xia, Qiangwei; Wang, Tiansong
  • The Analyst, Vol. 131, Issue 12
  • DOI: 10.1039/b610957h

The role of statistical power analysis in quantitative proteomics
journal, May 2011


Monitoring in vivo reversible cysteine oxidation in proteins using ICAT and mass spectrometry
journal, April 2014

  • García-Santamarina, Sarela; Boronat, Susanna; Domènech, Alba
  • Nature Protocols, Vol. 9, Issue 5
  • DOI: 10.1038/nprot.2014.065

Proteome-wide Light/Dark Modulation of Thiol Oxidation in Cyanobacteria Revealed by Quantitative Site-specific Redox Proteomics
journal, August 2014

  • Guo, Jia; Nguyen, Amelia Y.; Dai, Ziyu
  • Molecular & Cellular Proteomics, Vol. 13, Issue 12
  • DOI: 10.1074/mcp.M114.041160

Proteomic Analysis of Early-Responsive Redox-Sensitive Proteins in Arabidopsis
journal, November 2011

  • Wang, Hai; Wang, Shengbing; Lu, Yuqing
  • Journal of Proteome Research, Vol. 11, Issue 1
  • DOI: 10.1021/pr200918f

Selective fluorescent labeling of S-nitrosothiols (S-FLOS): A novel method for studying S-nitrosation
journal, November 2008


Proteomic Identification of S -Nitrosylated Proteins in Arabidopsis
journal, February 2005

  • Lindermayr, Christian; Saalbach, Gerhard; Durner, Jörg
  • Plant Physiology, Vol. 137, Issue 3
  • DOI: 10.1104/pp.104.058719

Systematic Assessment of Survey Scan and MS2-Based Abundance Strategies for Label-Free Quantitative Proteomics Using High-Resolution MS Data
journal, March 2014

  • Tu, Chengjian; Li, Jun; Sheng, Quanhu
  • Journal of Proteome Research, Vol. 13, Issue 4
  • DOI: 10.1021/pr401206m

Sources of Technical Variability in Quantitative LC–MS Proteomics: Human Brain Tissue Sample Analysis
journal, April 2013

  • Piehowski, Paul D.; Petyuk, Vladislav A.; Orton, Daniel J.
  • Journal of Proteome Research, Vol. 12, Issue 5
  • DOI: 10.1021/pr301146m

Systematic Comparison of Label-Free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos
journal, January 2012

  • Li, Zhou; Adams, Rachel M.; Chourey, Karuna
  • Journal of Proteome Research, Vol. 11, Issue 3
  • DOI: 10.1021/pr200748h

Large-Scale Capture of Peptides Containing Reversibly Oxidized Cysteines by Thiol-Disulfide Exchange Applied to the Myocardial Redox Proteome
journal, March 2013

  • Paulech, Jana; Solis, Nestor; Edwards, Alistair V. G.
  • Analytical Chemistry, Vol. 85, Issue 7
  • DOI: 10.1021/ac400166e

Profiling Thiol Redox Proteome Using Isotope Tagging Mass Spectrometry
journal, January 2012

  • Parker, Jennifer; Zhu, Ning; Zhu, Mengmeng
  • Journal of Visualized Experiments, Issue 61
  • DOI: 10.3791/3766