Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii
- Authors:
- Publication Date:
- Research Org.:
- Energy Frontier Research Centers (EFRC) (United States). Center for Advanced Biofuel Systems (CABS)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1369671
- DOE Contract Number:
- SC0001295
- Resource Type:
- Journal Article
- Journal Name:
- Journal of Experimental Botany
- Additional Journal Information:
- Journal Volume: 66; Journal Issue: 15; Related Information: CABS partners with the Donald Danforth Plant Science Center (lead); Michigan State University; New Mexico Consortium; University of Nebraska; University of Missouri – St. Louis; Washington State University; Journal ID: ISSN 0022-0957
- Publisher:
- Oxford University Press
- Country of Publication:
- United States
- Language:
- English
Citation Formats
Gargouri, Mahmoud, Park, Jeong-Jin, Holguin, F. Omar, Kim, Min-Jeong, Wang, Hongxia, Deshpande, Rahul R., Shachar-Hill, Yair, Hicks, Leslie M., and Gang, David R. Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii. United States: N. p., 2015.
Web. doi:10.1093/jxb/erv217.
Gargouri, Mahmoud, Park, Jeong-Jin, Holguin, F. Omar, Kim, Min-Jeong, Wang, Hongxia, Deshpande, Rahul R., Shachar-Hill, Yair, Hicks, Leslie M., & Gang, David R. Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii. United States. https://doi.org/10.1093/jxb/erv217
Gargouri, Mahmoud, Park, Jeong-Jin, Holguin, F. Omar, Kim, Min-Jeong, Wang, Hongxia, Deshpande, Rahul R., Shachar-Hill, Yair, Hicks, Leslie M., and Gang, David R. 2015.
"Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii". United States. https://doi.org/10.1093/jxb/erv217.
@article{osti_1369671,
title = {Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii},
author = {Gargouri, Mahmoud and Park, Jeong-Jin and Holguin, F. Omar and Kim, Min-Jeong and Wang, Hongxia and Deshpande, Rahul R. and Shachar-Hill, Yair and Hicks, Leslie M. and Gang, David R.},
abstractNote = {},
doi = {10.1093/jxb/erv217},
url = {https://www.osti.gov/biblio/1369671},
journal = {Journal of Experimental Botany},
issn = {0022-0957},
number = 15,
volume = 66,
place = {United States},
year = {Thu May 28 00:00:00 EDT 2015},
month = {Thu May 28 00:00:00 EDT 2015}
}
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Differential Regulation of the Chlamydomonas Nar1 Gene Family by Carbon and Nitrogen
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Comprehensive Comparison of iTRAQ and Label-free LC-Based Quantitative Proteomics Approaches Using Two Chlamydomonas reinhardtii Strains of Interest for Biofuels Engineering
journal, December 2011
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- Journal of Proteome Research, Vol. 11, Issue 1
Error and attack tolerance of complex networks
journal, July 2000
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An ancient light-harvesting protein is critical for the regulation of algal photosynthesis
journal, November 2009
- Peers, Graham; Truong, Thuy B.; Ostendorf, Elisabeth
- Nature, Vol. 462, Issue 7272
Exploiting diversity and synthetic biology for the production of algal biofuels
journal, August 2012
- Georgianna, D. Ryan; Mayfield, Stephen P.
- Nature, Vol. 488, Issue 7411
Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene
journal, September 2007
- Karaba, A.; Dixit, S.; Greco, R.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 39
Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth
journal, November 2013
- Trentacoste, E. M.; Shrestha, R. P.; Smith, S. R.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 49
Evidence for cross-pathway regulation of metabolic gene expression in plants.
journal, May 1995
- Guyer, D.; Patton, D.; Ward, E.
- Proceedings of the National Academy of Sciences, Vol. 92, Issue 11
Amino Acid and Adenine Cross-pathway Regulation Act through the Same 5′-TGACTC-3′ Motif in the Yeast HIS7 Promoter
journal, November 1996
- Springer, Christoph; Künzler, Markus; Balmelli, Tiziano
- Journal of Biological Chemistry, Vol. 271, Issue 47
Responses of the photosynthetic apparatus of Dunaliella tertiolecta (Chlorophyceae) to nitrogen and phosphorus limitation
journal, November 1998
- Geider, Richard; Graziano, Lisa
- European Journal of Phycology, Vol. 33, Issue 4
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journal, July 2011
- Doane, David P.; Seward, Lori E.
- Journal of Statistics Education, Vol. 19, Issue 2
Metabolic Pathway Relationships Revealed by an Integrative Analysis of the Transcriptional and Metabolic Temperature Stress-Response Dynamics in Yeast
journal, June 2010
- Walther, Dirk; Strassburg, Katrin; Durek, Pawel
- OMICS: A Journal of Integrative Biology, Vol. 14, Issue 3
Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts
journal, April 2002
- Greenbaum, D.; Jansen, R.; Gerstein, M.
- Bioinformatics, Vol. 18, Issue 4
Detection and interpretation of metabolite–transcript coresponses using combined profiling data
journal, June 2011
- Redestig, Henning; Costa, Ivan G.
- Bioinformatics, Vol. 27, Issue 13
Tab2 is a novel conserved RNA binding protein required for translation of the chloroplast psaB mRNA
journal, December 2003
- Dauvillee, D.
- The EMBO Journal, Vol. 22, Issue 23
Molybdoenzymes and molybdenum cofactor in plants
journal, August 2002
- Mendel, R. R.
- Journal of Experimental Botany, Vol. 53, Issue 375
Integrative gene-metabolite network with implemented causality deciphers informational fluxes of sulphur stress response
journal, May 2005
- Nikiforova, Victoria J.; Daub, Carsten O.; Hesse, Holger
- Journal of Experimental Botany, Vol. 56, Issue 417
The Evolutionary Origin of an Altruistic Gene
journal, May 2006
- Nedelcu, Aurora M.; Michod, Richard E.
- Molecular Biology and Evolution, Vol. 23, Issue 8
Phytozome: a comparative platform for green plant genomics
journal, November 2011
- Goodstein, David M.; Shu, Shengqiang; Howson, Russell
- Nucleic Acids Research, Vol. 40, Issue D1
Oil accumulation is controlled by carbon precursor supply for fatty acid synthesis in Chlamydomonas reinhardtii
journal, May 2012
- Fan, Jilian; Yan, Chengshi; Andre, Carl
- Plant and Cell Physiology, Vol. 53, Issue 8
Overlapping Photoprotective Function of Vitamin E and Carotenoids in Chlamydomonas
journal, November 2011
- Li, Zhirong; Keasling, Jay D.; Niyogi, Krishna K.
- Plant Physiology, Vol. 158, Issue 1
The Regulation of Photosynthetic Structure and Function during Nitrogen Deprivation in Chlamydomonas reinhardtii
journal, December 2014
- Juergens, Matthew T.; Deshpande, Rahul R.; Lucker, Ben F.
- Plant Physiology, Vol. 167, Issue 2
Zeaxanthin Accumulation in the Absence of a Functional Xanthophyll Cycle Protects Chlamydomonas reinhardtii from Photooxidative Stress
journal, March 2003
- Baroli, Irene; Do, An D.; Yamane, Tomoko
- The Plant Cell, Vol. 15, Issue 4
Etioplast Differentiation in Arabidopsis: Both PORA and PORB Restore the Prolamellar Body and Photoactive Protochlorophyllide–F655 to the cop1 Photomorphogenic Mutant
journal, February 1998
- Sperling, Ulrich; Franck, Fabrice; van Cleve, Barbara
- The Plant Cell, Vol. 10, Issue 2
NAB1 Is an RNA Binding Protein Involved in the Light-Regulated Differential Expression of the Light-Harvesting Antenna of Chlamydomonas reinhardtii
journal, November 2005
- Mussgnug, Jan H.; Wobbe, Lutz; Elles, Ingolf
- The Plant Cell, Vol. 17, Issue 12
Nitrate Signaling by the Regulatory Gene NIT2 in Chlamydomonas
journal, November 2007
- Camargo, Antonio; Llamas, Ángel; Schnell, Rogene A.
- The Plant Cell, Vol. 19, Issue 11
Analysis of Transcription Factor HY5 Genomic Binding Sites Revealed Its Hierarchical Role in Light Regulation of Development
journal, March 2007
- Lee, Jungeun; He, Kun; Stolc, Viktor
- The Plant Cell, Vol. 19, Issue 3
A Galactoglycerolipid Lipase Is Required for Triacylglycerol Accumulation and Survival Following Nitrogen Deprivation in Chlamydomonas reinhardtii
journal, November 2012
- Li, Xiaobo; Moellering, Eric R.; Liu, Bensheng
- The Plant Cell, Vol. 24, Issue 11
Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant
journal, November 2013
- Blaby, I. K.; Glaesener, A. G.; Mettler, T.
- The Plant Cell, Vol. 25, Issue 11
Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism
journal, April 2014
- Schmollinger, Stefan; Mühlhaus, Timo; Boyle, Nanette R.
- The Plant Cell, Vol. 26, Issue 4
The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis
journal, February 2015
- Park, Jeong-Jin; Wang, Hongxia; Gargouri, Mahmoud
- The Plant Journal, Vol. 81, Issue 4
A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement
journal, January 2014
- He, Ruifeng; Salvato, Fernanda; Park, Jeong-Jin
- BMC Plant Biology, Vol. 14, Issue 1
High quality metabolomic data for Chlamydomonas reinhardtii
journal, January 2008
- Lee, Do; Fiehn, Oliver
- Plant Methods, Vol. 4, Issue 1
Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis
journal, January 2010
- Allen, Elizabeth; Moing, Annick; Ebbels, Timothy MD
- BMC Systems Biology, Vol. 4, Issue 1
The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes
journal, August 2008
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