skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism

Authors:
; ; ; ; ; ; ; ; ORCiD logo; ; ORCiD logo; ; ; ORCiD logo
Publication Date:
Research Org.:
Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Org.:
National Institutes of Health (NIH)
OSTI Identifier:
1368263
Resource Type:
Journal Article
Journal Name:
Proceedings of the National Academy of Sciences of the United States of America
Additional Journal Information:
Journal Volume: 114; Journal Issue: 13; Journal ID: ISSN 0027-8424
Publisher:
National Academy of Sciences, Washington, DC (United States)
Country of Publication:
United States
Language:
ENGLISH

Citation Formats

Gulati, Sahil, Jastrzebska, Beata, Banerjee, Surajit, Placeres, Ángel L., Miszta, Przemyslaw, Gao, Songqi, Gunderson, Karl, Tochtrop, Gregory P., Filipek, Sławomir, Katayama, Kota, Kiser, Philip D., Mogi, Muneto, Stewart, Phoebe L., and Palczewski, Krzysztof. Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism. United States: N. p., 2017. Web. doi:10.1073/pnas.1617446114.
Gulati, Sahil, Jastrzebska, Beata, Banerjee, Surajit, Placeres, Ángel L., Miszta, Przemyslaw, Gao, Songqi, Gunderson, Karl, Tochtrop, Gregory P., Filipek, Sławomir, Katayama, Kota, Kiser, Philip D., Mogi, Muneto, Stewart, Phoebe L., & Palczewski, Krzysztof. Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism. United States. doi:10.1073/pnas.1617446114.
Gulati, Sahil, Jastrzebska, Beata, Banerjee, Surajit, Placeres, Ángel L., Miszta, Przemyslaw, Gao, Songqi, Gunderson, Karl, Tochtrop, Gregory P., Filipek, Sławomir, Katayama, Kota, Kiser, Philip D., Mogi, Muneto, Stewart, Phoebe L., and Palczewski, Krzysztof. Mon . "Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism". United States. doi:10.1073/pnas.1617446114.
@article{osti_1368263,
title = {Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism},
author = {Gulati, Sahil and Jastrzebska, Beata and Banerjee, Surajit and Placeres, Ángel L. and Miszta, Przemyslaw and Gao, Songqi and Gunderson, Karl and Tochtrop, Gregory P. and Filipek, Sławomir and Katayama, Kota and Kiser, Philip D. and Mogi, Muneto and Stewart, Phoebe L. and Palczewski, Krzysztof},
abstractNote = {},
doi = {10.1073/pnas.1617446114},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
issn = {0027-8424},
number = 13,
volume = 114,
place = {United States},
year = {2017},
month = {3}
}

Works referenced in this record:

Requirement of Rigid-Body Motion of Transmembrane Helices for Light Activation of Rhodopsin
journal, November 1996


Solving structures of protein complexes by molecular replacement with Phaser
journal, December 2006

  • McCoy, Airlie J.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 63, Issue 1
  • DOI: 10.1107/S0907444906045975

G Protein–Coupled Receptor Rhodopsin
journal, June 2006


Scalable molecular dynamics with NAMD
journal, January 2005

  • Phillips, James C.; Braun, Rosemary; Wang, Wei
  • Journal of Computational Chemistry, Vol. 26, Issue 16, p. 1781-1802
  • DOI: 10.1002/jcc.20289

Announcing the worldwide Protein Data Bank
journal, December 2003

  • Berman, Helen; Henrick, Kim; Nakamura, Haruki
  • Nature Structural & Molecular Biology, Vol. 10, Issue 12
  • DOI: 10.1038/nsb1203-980

Regulation of the rhodopsin-transducin interaction by a highly conserved carboxylic acid group
journal, July 1993


Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms
journal, September 2013

  • Ernst, Oliver P.; Lodowski, David T.; Elstner, Marcus
  • Chemical Reviews, Vol. 114, Issue 1
  • DOI: 10.1021/cr4003769

The Retinal Conformation and its Environment in Rhodopsin in Light of a New 2.2Å Crystal Structure
journal, September 2004

  • Okada, Tetsuji; Sugihara, Minoru; Bondar, Ana-Nicoleta
  • Journal of Molecular Biology, Vol. 342, Issue 2
  • DOI: 10.1016/j.jmb.2004.07.044

Maximal Rate and Nucleotide Dependence of Rhodopsin-catalyzed Transducin Activation: INITIAL RATE ANALYSIS BASED ON A DOUBLE DISPLACEMENT MECHANISM
journal, December 2000

  • Heck, Martin; Hofmann, Klaus Peter
  • Journal of Biological Chemistry, Vol. 276, Issue 13
  • DOI: 10.1074/jbc.M009475200

Opsin, a Structural Model for Olfactory Receptors?
journal, August 2013

  • Park, Jung Hee; Morizumi, Takefumi; Li, Yafang
  • Angewandte Chemie International Edition, Vol. 52, Issue 42
  • DOI: 10.1002/anie.201302374

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
journal, May 2007

  • Davis, I. W.; Leaver-Fay, A.; Chen, V. B.
  • Nucleic Acids Research, Vol. 35, Issue Web Server
  • DOI: 10.1093/nar/gkm216

The CCP4 suite programs for protein crystallography
journal, September 1994


Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
journal, June 2010

  • Klauda, Jeffery B.; Venable, Richard M.; Freites, J. Alfredo
  • The Journal of Physical Chemistry B, Vol. 114, Issue 23
  • DOI: 10.1021/jp101759q

Crystal structure of the ligand-free G-protein-coupled receptor opsin
journal, June 2008

  • Park, Jung Hee; Scheerer, Patrick; Hofmann, Klaus Peter
  • Nature, Vol. 454, Issue 7201
  • DOI: 10.1038/nature07063

XDS
journal, January 2010

  • Kabsch, Wolfgang
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2
  • DOI: 10.1107/S0907444909047337

Low-resolution refinement tools in REFMAC 5
journal, March 2012

  • Nicholls, Robert A.; Long, Fei; Murshudov, Garib N.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 4
  • DOI: 10.1107/S090744491105606X

Role of Bulk Water in Hydrolysis of the Rhodopsin Chromophore
journal, April 2011

  • Jastrzebska, Beata; Palczewski, Krzysztof; Golczak, Marcin
  • Journal of Biological Chemistry, Vol. 286, Issue 21
  • DOI: 10.1074/jbc.M111.234583

Unusual kinetics of thermal decay of dim-light photoreceptors in vertebrate vision
journal, July 2014

  • Guo, Y.; Sekharan, S.; Liu, J.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 29
  • DOI: 10.1073/pnas.1410826111

Electron Density Sharpening as a General Technique in Crystallographic Studies
journal, February 2014


Improved Structures of Full-Length p97, an AAA ATPase: Implications for Mechanisms of Nucleotide-Dependent Conformational Change
journal, May 2008


Crystal Structure of Rhodopsin: A G Protein-Coupled Receptor
journal, August 2000


MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009

  • Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
  • DOI: 10.1107/S0907444909042073

Coot model-building tools for molecular graphics
journal, November 2004

  • Emsley, Paul; Cowtan, Kevin
  • Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132
  • DOI: 10.1107/S0907444904019158

X-ray structure determination at low resolution
journal, January 2009

  • Brunger, Axel T.; DeLaBarre, Byron; Davies, Jason M.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 65, Issue 2
  • DOI: 10.1107/S0907444908043795

Structure of Bovine Rhodopsin in a Trigonal Crystal Form
journal, November 2004

  • Li, Jade; Edwards, Patricia C.; Burghammer, Manfred
  • Journal of Molecular Biology, Vol. 343, Issue 5
  • DOI: 10.1016/j.jmb.2004.08.090

The structure and mechanism of the family of retinal proteins from halophilic archaea
journal, August 1998


Super-resolution biomolecular crystallography with low-resolution data
journal, April 2010

  • Schröder, Gunnar F.; Levitt, Michael; Brunger, Axel T.
  • Nature, Vol. 464, Issue 7292
  • DOI: 10.1038/nature08892

Crystal structure of metarhodopsin II
journal, March 2011

  • Choe, Hui-Woog; Kim, Yong Ju; Park, Jung Hee
  • Nature, Vol. 471, Issue 7340
  • DOI: 10.1038/nature09789

Phaser crystallographic software
journal, July 2007

  • McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D.
  • Journal of Applied Crystallography, Vol. 40, Issue 4
  • DOI: 10.1107/S0021889807021206