skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Sparx PCA Module

Abstract

Sparx, a new environment for Cryo-EM image processing; Cryo-EM, Single particle reconstruction, principal component analysis; Hardware Req.: PC, MAC, Supercomputer, Mainframe, Multiplatform, Workstation. Software Req.: operating system is Unix; Compiler C++; type of files: source code, object library, executable modules, compilation instructions; sample problem input data. Location/transmission: http://sparx-em.org; User manual & paper: http://sparx-em.org;

Authors:
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE
Contributing Org.:
Lawrence Berkeley National Laboratory
OSTI Identifier:
1364330
Report Number(s):
Sparx PCA Module; 005247WKSTN00
R&D Project: NONE; CR-2984
DOE Contract Number:
AC02-05CH11231
Resource Type:
Software
Software Revision:
00
Software Package Number:
005247
Software CPU:
WKSTN
Open Source:
Yes
Source Code Available:
Yes
Country of Publication:
United States

Citation Formats

Yang, Chao. Sparx PCA Module. Computer software. https://www.osti.gov//servlets/purl/1364330. Vers. 00. USDOE. 25 Apr. 2017. Web.
Yang, Chao. (2017, April 25). Sparx PCA Module (Version 00) [Computer software]. https://www.osti.gov//servlets/purl/1364330.
Yang, Chao. Sparx PCA Module. Computer software. Version 00. April 25, 2017. https://www.osti.gov//servlets/purl/1364330.
@misc{osti_1364330,
title = {Sparx PCA Module, Version 00},
author = {Yang, Chao},
abstractNote = {Sparx, a new environment for Cryo-EM image processing; Cryo-EM, Single particle reconstruction, principal component analysis; Hardware Req.: PC, MAC, Supercomputer, Mainframe, Multiplatform, Workstation. Software Req.: operating system is Unix; Compiler C++; type of files: source code, object library, executable modules, compilation instructions; sample problem input data. Location/transmission: http://sparx-em.org; User manual & paper: http://sparx-em.org;},
url = {https://www.osti.gov//servlets/purl/1364330},
doi = {},
year = {Tue Apr 25 00:00:00 EDT 2017},
month = {Tue Apr 25 00:00:00 EDT 2017},
note =
}

Software:
To order this software, request consultation services, or receive further information, please fill out the following request.

Save / Share:
  • The Fuel Oil Management System (FOMS) is a micro-computer based software system being developed to assist electric utilities that use residual fuel oils with oil purchase and end-use decisions. The Tank Management Module (TMM) is the first FOMS module to be produced. TMM enables the user to follow the mixing status of oils contained in a number of oil storage tanks. The software contains a computational model of residual fuel oil mixing which addresses mixing that occurs as one oil is added to another in a storage tank and also purposeful mixing of the tank by propellers, recirculation or convection.Themore » model also addresses the potential for sludge formation due to incompatibility of oils being mixed. Part 1 of the report presents a technical description of the mixing model and a description of its development. Steps followed in developing the mixing model included: (1) definition of ranges of oil properties and tank design factors used by utilities; (2) review and adaption of prior applicable work; (3) laboratory development; and (4) field verification. Also, a brief laboratory program was devoted to exploring the suitability of suggested methods for predicting viscosities, flash points and pour points of oil mixtures. Part 2 of the report presents a functional description of the TMM software and a description of its development. The software development program consisted of the following steps: (1) on-site interviews at utilities to prioritize needs and characterize user environments; (2) construction of the user interface; and (3) field testing the software.« less
  • The Department of Energy Data Exchange Format (DOEDEF) Translator Module Pool A (hereafter referred to as the ''pool'') is intended to reduce the manpower required to rewrite the DOEDEF translator software already in existence throughout the Department of Energy Nuclear Weapons Complex (DOE NWC). Each portion of the DOEDEF exchange system and therefore each site's DOEDEF translator software must be rewritten during the transition from Phase 1.0 to Phase 1.5 of DOEDEF. By providing a pool, some of which (if not all) can be used by multiple NWC sites, the effort required to move from Phase 1.0 to Phase 1.5more » can be reduced.« less
  • The Analytic System and Software for Evaluating Safeguards and Security (ASSESS) includes modules for analyzing vulnerabilities against outsider and insider adversaries. The ASSESS Outsider Analysis Module has been upgraded to allow for defining, analyzing, and displaying the results of multiple analyses. Once a set of threat definitions have been defined in one Outsider file, they can be readily copied to other Outsider files. This multiple analysis, or batch, mode of operation provides an efficient way of covering the standard DOE outsider threat spectrum. A new approach for coupling the probability of interruption, P(I), values and values calculated by the ASSESSmore » Neutralization module has been implemented in Outsider and is described. An enhanced capability for printing results of these multiple analyses is also included in the upgraded Outside module. 7 refs., 7 figs., 1 tab.« less
  • A tape was made which contains the USAC Municipal Vehicle Management Module for the Reading, Pennsylvania, Integrated Municipal Information System (IMIS). The programs included on this tape produce from input cards a fuel consumption report. The cards are edited and then used as input to the program that produces a report by vehicle within Bureau showing fuel consumed during the reporting period. Totals are produced by vehicle by Bureau, and by fuel distribution point. There are 2 programs recorded on the tape. 32K bytes of core storage are needed to operate this module on a UNIVAC Model 9300 II computer.more » Technical documentation describing this module is available.« less
  • The Waste Receiving and Processing (WRAP) Module 1 Data Management System (DMS) System Design Description (SDD) describes the logical and physical architecture of the system. The WRAP 1 DMS SDD formally partitions the elements of the system described in the WRAP 1 DMS Software requirements specification into design objects and describes the key properties and relationships among the design objects and interfaces with external systems such as the WRAP Plant Control System (PCS). The WRAP 1 DMS SDD can be thought of as a detailed blueprint for implementation activities. The design descriptions contained within this document will describe, in detail,more » the software products that will be developed to assist the Project W-026, Waste Receiving and Processing Module 1, in their management functions. The WRAP 1 DMS is required to collect, store, and report data related to certification, tracking, packaging, repackaging, processing, and shipment of waste processed or stored at the WRAP 1 facility.« less

To initiate an order for this software, request consultation services, or receive further information, fill out the request form below. You may also reach us by email at: .

OSTI staff will begin to process an order for scientific and technical software once the payment and signed site license agreement are received. If the forms are not in order, OSTI will contact you. No further action will be taken until all required information and/or payment is received. Orders are usually processed within three to five business days.

Software Request

(required)
(required)
(required)
(required)
(required)
(required)
(required)
(required)