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Title: Adding stable carbon isotopes improves model representation of the role of microbial communities in peatland methane cycling

Journal Article · · Journal of Advances in Modeling Earth Systems
DOI:https://doi.org/10.1002/2016MS000817· OSTI ID:1363819
ORCiD logo [1]; ORCiD logo [2];  [1]; ORCiD logo [3]; ORCiD logo [4]; ORCiD logo [5];  [6]; ORCiD logo [7];  [8];  [9];  [1]
  1. Earth Systems Research Center, Institute for the Study of Earth, Oceans and Space, University of New Hampshire Durham New Hampshire USA
  2. Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, One Lomb Memorial Drive Rochester New York USA
  3. Department of Earth, Ocean and Atmospheric Science Florida State University Tallahassee Florida USA
  4. Department of Geological Sciences Stockholm University Stockholm Sweden
  5. Earth Systems Research Center, Institute for the Study of Earth, Oceans and Space, University of New Hampshire Durham New Hampshire USA, Department of Earth Sciences University of New Hampshire Durham New Hampshire USA
  6. Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences University of Queensland Brisbane Queensland Australia
  7. Department of Microbiology The Ohio State University Columbus Ohio USA
  8. Department of Biological Sciences University of Massachusetts Lowell Lowell Massachusetts USA
  9. Department of Ecology and Evolutionary Biology University of Arizona Tucson Arizona USA

Climate change is expected to have significant and uncertain impacts on methane (CH4) emissions from northern peatlands. Biogeochemical models can extrapolate site-specific CH4 measurements to larger scales and predict responses of CH4 emissions to environmental changes. However, these models include considerable uncertainties and limitations in representing CH4 production, consumption, and transport processes. To improve predictions of CH4 transformations, we incorporated acetate and stable carbon (C) isotopic dynamics associated with CH4 cycling into a biogeochemistry model, DNDC. By including these new features, DNDC explicitly simulates acetate dynamics and the relative contribution of acetotrophic and hydrogenotrophic methanogenesis (AM and HM) to CH4 production, and predicts the C isotopic signature (δ13C) in soil C pools and emitted gases. When tested against biogeochemical and microbial community observations at two sites in a zone of thawing permafrost in a subarctic peatland in Sweden, the new formulation substantially improved agreement with CH4 production pathways and δ13C in emitted CH413C-CH4), a measure of the integrated effects of microbial production and consumption, and of physical transport. We also investigated the sensitivity of simulated δ13C-CH4 to C isotopic composition of substrates and, to fractionation factors for CH4 production (αAM and αHM), CH4 oxidation (αMO), and plant-mediated CH4 transport (αTP). The sensitivity analysis indicated that the δ13C-CH4 is highly sensitive to the factors associated with microbial metabolism (αAM, αHM, and αMO). The model framework simulating stable C isotopic dynamics provides a robust basis for better constraining and testing microbial mechanisms in predicting CH4 cycling in peatlands.

Research Organization:
Univ. of Arizona, Tucson, AZ (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
Grant/Contract Number:
DE‐SC0004632; DE‐SC0010580; SC0004632; SC0010580
OSTI ID:
1363819
Alternate ID(s):
OSTI ID: 1363820; OSTI ID: 1393576
Journal Information:
Journal of Advances in Modeling Earth Systems, Journal Name: Journal of Advances in Modeling Earth Systems Vol. 9 Journal Issue: 2; ISSN 1942-2466
Publisher:
American Geophysical Union (AGU)Copyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 17 works
Citation information provided by
Web of Science

References (70)

Modeling Trace Gas Emissions from Agricultural Ecosystems journal November 2000
Vulnerability of Permafrost Carbon to Climate Change: Implications for the Global Carbon Cycle journal September 2008
High risk of permafrost thaw journal November 2011
Carbon and hydrogen isotope ratio characterization of methane dynamics for Fluxnet Peatland Ecosystems journal June 2011
Effects of permafrost and hydrology on the composition and transport of dissolved organic carbon in a subarctic peatland complex: DOC IN A SUBARCTIC PEATLAND COMPLEX journal January 2012
A new climate era in the sub-Arctic: Accelerating climate changes and multiple impacts: CHANGING CLIMATE IN THE SUB-ARCTIC journal July 2010
Do we need to understand microbial communities to predict ecosystem function? A comparison of statistical models of nitrogen cycling processes journal January 2014
Estimating the near-surface permafrost-carbon feedback on global warming journal January 2012
Microbial processes of CH4 production in a rice paddy soil: model and experimental validation journal July 2001
Total hydrocarbon flux dynamics at a subarctic mire in northern Sweden journal January 2008
Northern Peatlands: Role in the Carbon Cycle and Probable Responses to Climatic Warming journal May 1991
Assessing effects of permafrost thaw on C fluxes based on multiyear modeling across a permafrost thaw gradient at Stordalen, Sweden journal January 2014
CLIMATE CHANGE: Permafrost and the Global Carbon Budget journal June 2006
Peatlands in the Earth’s 21st century climate system journal December 2011
A pan-Arctic synthesis of CH 4 and CO 2 production from anoxic soil incubations journal March 2015
Humic substances as electron acceptors for microbial respiration journal August 1996
Soil incubations reproduce field methane dynamics in a subarctic wetland journal October 2015
A process-oriented model of N 2 O and NO emissions from forest soils: 1. Model development journal February 2000
Peatlands and the carbon cycle: from local processes to global implications – a synthesis journal January 2008
Multi-decadal degradation and persistence of permafrost in the Alaska Highway corridor, northwest Canada journal October 2013
Stable carbon isotope fractionation during methanogenesis in three boreal peatland ecosystems journal January 2010
Incorporation of a permafrost model into a large-scale ecosystem model: Evaluation of temporal and spatial scaling issues in simulating soil thermal dynamics journal December 2001
Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production journal April 2014
Sensitivity Analysis of the wepp Hillslope Profile Erosion Model journal January 1990
Accelerated thawing of subarctic peatland permafrost over the last 50 years journal January 2004
Methane production as a function of anaerobic carbon mineralization: A process model journal August 1998
Effect of permafrost thaw on CO 2 and CH 4 exchange in a western Alaska peatland chronosequence journal August 2014
Environmental and physical controls on northern terrestrial methane emissions across permafrost zones journal November 2012
The effect of permafrost thaw on old carbon release and net carbon exchange from tundra journal May 2009
Microbes in thawing permafrost: the unknown variable in the climate change equation journal November 2011
Carbon Isotope Ratios in Belowground Carbon Cycle Processes journal April 2000
Vegetation, climatic changes and net carbon sequestration in a North-Scandinavian subarctic mire over 30 years journal October 2005
Global peatland dynamics since the Last Glacial Maximum: GLOBAL PEATLANDS SINCE THE LGM journal July 2010
Modeling greenhouse gas emissions from rice-based production systems: Sensitivity and upscaling: MODELING GHGS IN RICE-BASED AGRICULTURE journal March 2004
An integrated model of soil, hydrology, and vegetation for carbon dynamics in wetland ecosystems: SOIL, HYDROLOGY, VEGETATION INTEGRATED MODEL journal October 2002
Variability in exchange of CO2 across 12 northern peatland and tundra sites: EXCHANGE OF CO2 IN WETLANDS journal December 2009
Anaerobic microbial biogeochemistry in a northern bog: Acetate as a dominant metabolic end product: ANAEROBIC MICROBIAL BIOGEOCHEMISTRY IN A NORTHERN BOG journal October 2002
Factors controlling 13C contents of sedimentary organic compounds: Principles and evidence journal July 1993
Methane emission from rice: Stable isotopes, diurnal variations, and CO 2 exchange journal March 1997
Partitioning pathways of CO2 production in peatlands with stable carbon isotopes journal December 2012
Methane fluxes between terrestrial ecosystems and the atmosphere at northern high latitudes during the past century: A retrospective analysis with a process-based biogeochemistry model: METHANE EMISSIONS FROM NORTHERN HIGH LATITUDES journal August 2004
Thawing sub-arctic permafrost: Effects on vegetation and methane emissions journal January 2004
Modeling impacts of changes in temperature and water table on C gas fluxes in an Alaskan peatland: Modeling C Gas Fluxes in Peatland journal July 2015
Nutrients and Hydrology Indicate the Driving Mechanisms of Peatland Surface Patterning journal June 2009
Manure-DNDC: a biogeochemical process model for quantifying greenhouse gas and ammonia emissions from livestock manure systems journal May 2012
Decadal vegetation changes in a northern peatland, greenhouse gas fluxes and net radiative forcing journal December 2006
Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments journal March 1999
Sensitivity of the carbon cycle in the Arctic to climate change journal November 2009
Integrating peatlands and permafrost into a dynamic global vegetation model: 2. Evaluation and sensitivity of vegetation and carbon cycle processes: PEATLANDS AND PERMAFROST IN LPJ, 2 journal August 2009
Integrating peatlands and permafrost into a dynamic global vegetation model: 1. Evaluation and sensitivity of physical land surface processes: PEATLANDS AND PERMAFROST IN LPJ, 1 journal August 2009
Environmental controls on CH4 emission from polygonal tundra on the microsite scale in the Lena river delta, Siberia: CONTROLS ON TUNDRA CH4 FLUX AND SCALING journal April 2010
Thawing permafrost and thicker active layers in sub-arctic Sweden journal July 2008
Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales journal February 2013
Annual carbon gas budget for a subarctic peatland, Northern Sweden journal January 2010
Reduction in areal extent of high-latitude wetlands in response to permafrost thaw journal June 2011
Methane dynamics regulated by microbial community response to permafrost thaw journal October 2014
Revising a process-based biogeochemistry model (DNDC) to simulate methane emission from rice paddy fields under various residue management and fertilizer regimes: MODELING METHANE EMISSION FROM RICE FIELDS journal October 2007
A model of nitrous oxide evolution from soil driven by rainfall events: 1. Model structure and sensitivity journal June 1992
Quantifying greenhouse gas emissions from soils: Scientific basis and modeling approach journal August 2007
Present state of global wetland extent and wetland methane modelling: conclusions from a model inter-comparison project (WETCHIMP) journal January 2013
Quantification of methanogenic pathways using stable carbon isotopic signatures: a review and a proposal journal May 2005
Present state of global wetland extent and wetland methane modelling: methodology of a model inter-comparison project (WETCHIMP) journal January 2013
Electron transfer of dissolved organic matter and its potential significance for anaerobic respiration in a northern bog journal August 2007
A model of nitrous oxide evolution from soil driven by rainfall events: 2. Model applications journal June 1992
Upscaling methane fluxes from closed chambers to eddy covariance based on a permafrost biogeochemistry integrated model journal December 2011
Discovery of a novel methanogen prevalent in thawing permafrost journal February 2014
Permafrost-thaw-induced land-cover change in the Canadian subarctic: implications for water resources journal November 2010
Carbon respiration from subsurface peat accelerated by climate warming in the subarctic journal July 2009
Reviews and syntheses: Four decades of modeling methane cycling in terrestrial ecosystems journal January 2016
Soil organic carbon pools in the northern circumpolar permafrost region: SOIL ORGANIC CARBON POOLS journal June 2009