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Title: A new stepwise carbon cycle data assimilation system using multiple data streams to constrain the simulated land surface carbon cycle

Journal Article · · Geoscientific Model Development (Online)
 [1];  [2];  [1];  [1];  [3];  [4];  [1];  [1];  [1];  [1];  [1];  [2]
  1. Lab. des Sciences du Climat et de l'Environnement, Gif-sur-Yvette (France)
  2. Noveltis, Ramonville-Saint-Agne (France)
  3. Lab. des Sciences du Climat et de l'Environnement, Gif-sur-Yvette (France); Univ. of Melbourne, VIC, Melbourne (Australia)
  4. Lab. des Sciences du Climat et de l'Environnement, Gif-sur-Yvette (France); IMASL-CONICET/Univ. Nacional de San Luis, San Luis (Argentina)

Here, large uncertainties in land surface models (LSMs) simulations still arise from inaccurate forcing, poor description of land surface heterogeneity (soil and vegetation properties), incorrect model parameter values and incomplete representation of biogeochemical processes. The recent increase in the number and type of carbon cycle-related observations, including both in situ and remote sensing measurements, has opened a new road to optimize model parameters via robust statistical model–data integration techniques, in order to reduce the uncertainties of simulated carbon fluxes and stocks. In this study we present a carbon cycle data assimilation system that assimilates three major data streams, namely the Moderate Resolution Imaging Spectroradiometer (MODIS)-Normalized Difference Vegetation Index (NDVI) observations of vegetation activity, net ecosystem exchange (NEE) and latent heat (LE) flux measurements at more than 70 sites (FLUXNET), as well as atmospheric CO2 concentrations at 53 surface stations, in order to optimize the main parameters (around 180 parameters in total) of the Organizing Carbon and Hydrology in Dynamics Ecosystems (ORCHIDEE) LSM (version 1.9.5 used for the Coupled Model Intercomparison Project Phase 5 (CMIP5) simulations). The system relies on a stepwise approach that assimilates each data stream in turn, propagating the information gained on the parameters from one step to the next. Overall, the ORCHIDEE model is able to achieve a consistent fit to all three data streams, which suggests that current LSMs have reached the level of development to assimilate these observations. The assimilation of MODIS-NDVI (step 1) reduced the growing season length in ORCHIDEE for temperate and boreal ecosystems, thus decreasing the global mean annual gross primary production (GPP). Using FLUXNET data (step 2) led to large improvements in the seasonal cycle of the NEE and LE fluxes for all ecosystems (i.e., increased amplitude for temperate ecosystems). The assimilation of atmospheric CO2, using the general circulation model (GCM) of the Laboratoire de Météorologie Dynamique (LMDz; step 3), provides an overall constraint (i.e., constraint on large-scale net CO2 fluxes), resulting in an improvement of the fit to the observed atmospheric CO2 growth rate. Thus, the optimized model predicts a land C (carbon) sink of around 2.2 PgC yr-1 (for the 2000–2009 period), which is more compatible with current estimates from the Global Carbon Project (GCP) than the prior value. The consistency of the stepwise approach is evaluated with back-compatibility checks. The final optimized model (after step 3) does not significantly degrade the fit to MODIS-NDVI and FLUXNET data that were assimilated in the first two steps, suggesting that a stepwise approach can be used instead of the more “challenging” implementation of a simultaneous optimization in which all data streams are assimilated together. Most parameters, including the scalar of the initial soil carbon pool size, changed during the optimization with a large error reduction. This work opens new perspectives for better predictions of the land carbon budgets.

Research Organization:
Oregon State Univ., Corvallis, OR (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
FG02-04ER63917; FG02-04ER63911
OSTI ID:
1361538
Journal Information:
Geoscientific Model Development (Online), Vol. 9, Issue 9; ISSN 1991-9603
Publisher:
European Geosciences UnionCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 61 works
Citation information provided by
Web of Science

References (95)

From site-level to global simulation: Reconciling carbon, water and energy fluxes over different spatial scales using a process-based ecophysiological land-surface model journal July 2013
Sensitivity of the Continental Hydrological Cycle to the Spatial Resolution over the Iberian Peninsula journal April 2004
Inverse Problem Theory and Methods for Model Parameter Estimation book January 2005
Global carbon budget 2014 text January 2015
Evaluation of a Global Vegetation Model using time series of satellite vegetation indices journal January 2011
Quantifying the model structural error in carbon cycle data assimilation systems journal January 2013
Using satellite data to improve the leaf phenology of a global terrestrial biosphere model journal January 2015
Factorial Sampling Plans for Preliminary Computational Experiments journal May 1991
Joint data assimilation of satellite reflectance and net ecosystem exchange data constrains ecosystem carbon fluxes at a high-elevation subalpine forest journal September 2014
Coupled Photosynthesis-Stomatal Conductance Model for Leaves of C4 Plants journal January 1992
Consistent assimilation of MERIS FAPAR and atmospheric CO2 into a terrestrial vegetation model and interactive mission benefit analysis posted_content November 2011
Interactive chemistry in the Laboratoire de Météorologie Dynamique general circulation model: Description and background tropospheric chemistry evaluation: INTERACTIVE CHEMISTRY IN LMDZ journal February 2004
Inversion of terrestrial ecosystem model parameter values against eddy covariance measurements by Monte Carlo sampling journal August 2005
Constraining a global ecosystem model with multi-site eddy-covariance data journal January 2012
Interannual variability in the oxygen isotopes of atmospheric CO2 driven by El Niño journal September 2011
Climate change projections using the IPSL-CM5 Earth System Model: from CMIP3 to CMIP5 journal February 2013
Consistent assimilation of multiple data streams in a carbon cycle data assimilation system journal January 2016
Impact of drought stress and other factors on seasonal land biosphere CO2 exchange studied through an atmospheric tracer transport model journal September 1995
Joint assimilation of eddy covariance flux measurements and FAPAR products over temperate forests within a process‐oriented biosphere model journal September 2015
Land-surface parameter optimisation using data assimilation techniques: the adJULES system V1.0 journal January 2016
A vertically discretised canopy description for ORCHIDEE (SVN r2290) and the modifications to the energy, water and carbon fluxes journal January 2015
Rate my data: quantifying the value of ecological data for the development of models of the terrestrial carbon cycle journal January 2013
Constraining a land surface model with multiple observations by application of the MPI-Carbon Cycle Data Assimilation System journal January 2016
An improved analysis of forest carbon dynamics using data assimilation journal January 2005
The decadal state of the terrestrial carbon cycle: Global retrievals of terrestrial carbon allocation, pools, and residence times journal January 2016
Reliable, robust and realistic: the three R's of next-generation land-surface modelling journal January 2015
Forest growing stock volume of the northern hemisphere: Spatially explicit estimates for 2010 derived from Envisat ASAR journal October 2015
Impact of drought stress and other factors on seasonal land biosphere CO 2 exchange studied through an atmospheric tracer transport model journal January 1995
Revised estimates of the annual net flux of carbon to the atmosphere from changes in land use and land management 1850-2000 journal April 2003
Application of Advanced Very High Resolution Radiometer vegetation index to study atmosphere-biosphere exchange of CO 2 journal January 1987
Evaluation of terrestrial carbon cycle models for their response to climate variability and to CO 2 trends journal April 2013
Using model-data fusion to interpret past trends, and quantify uncertainties in future projections, of terrestrial ecosystem carbon cycling journal April 2012
Factorial Sampling Plans for Preliminary Computational Experiments journal May 1991
Ecosystem model optimization using in situ flux observations: benefit of Monte Carlo versus variational schemes and analyses of the year-to-year model performances journal January 2014
Optimization of a prognostic biosphere model for terrestrial biomass and atmospheric CO 2 variability journal January 2014
Ecosystem model optimization using in situ flux observations: Benefit of Monte Carlo versus variational schemes and analyses of the year-to-year model performances text January 2014
The LMDZ4 general circulation model: climate performance and sensitivity to parametrized physics with emphasis on tropical convection journal August 2006
Multi-objective global optimization for hydrologic models journal January 1998
A Limited Memory Algorithm for Bound Constrained Optimization journal September 1995
The potential benefit of using forest biomass data in addition to carbon and water flux measurements to constrain ecosystem model parameters: Case studies at two temperate forest sites journal March 2017
Influences of observation errors in eddy flux data on inverse model parameter estimation journal January 2008
CO 2 surface fluxes at grid point scale estimated from a global 21 year reanalysis of atmospheric measurements journal January 2010
The current state of carbon-cycle data assimilation journal October 2010
Two decades of OH variability as inferred by an inversion of atmospheric transport and chemistry of methyl chloroform journal January 2005
Evaluation of SF 6 , C 2 Cl 4 , and CO to approximate fossil fuel CO 2 in the Northern Hemisphere using a chemistry transport model journal January 2006
Corrigendum to “Climatological mean and decadal change in surface ocean pCO2, and net sea–air CO2 flux over the global oceans” [Deep Sea Res. II 56 (2009) 554–577] journal November 2009
Relationship between wind speed and gas exchange over the ocean journal January 1992
On the role of atmospheric chemistry in the global CO 2 budget journal January 2005
Global carbon budget 2014 journal January 2015
Simultaneous assimilation of satellite and eddy covariance data for improving terrestrial water and carbon simulations at a semi-arid woodland site in Botswana journal January 2013
Consistent assimilation of MERIS FAPAR and atmospheric CO 2 into a terrestrial vegetation model and interactive mission benefit analysis journal January 2012
Estimating transpiration and the sensitivity of carbon uptake to water availability in a subalpine forest using a simple ecosystem process model informed by measured net CO2 and H2O fluxes journal September 2008
Towards a Generalized Approach for Correction of the BRDF Effect in MODIS Directional Reflectances journal March 2009
An integrated pan-tropical biomass map using multiple reference datasets journal January 2016
Parameter and prediction uncertainty in an optimized terrestrial carbon cycle model: Effects of constraining variables and data record length journal January 2011
Model–data fusion across ecosystems: from multisite optimizations to global simulations journal January 2014
Intercomparison of fraction of absorbed photosynthetically active radiation products derived from satellite data over Europe text January 2014
Representing subgrid-scale edaphic heterogeneity in a large-scale ecosystem model: A case study in the circumpolar boreal regions journal January 2008
Assimilating atmospheric data into a terrestrial biosphere model: A case study of the seasonal cycle: ASSIMILATING CO journal October 2002
The BETHY/JSBACH Carbon Cycle Data Assimilation System: experiences and challenges: BETHY/JSBACH CCDAS journal October 2013
Inferring CO 2 sources and sinks from satellite observations: Method and application to TOVS data journal January 2005
SECHIBA, a New Set of Parameterizations of the Hydrologic Exchanges at the Land-Atmosphere Interface within the LMD Atmospheric General Circulation Model journal February 1993
Two decades of terrestrial carbon fluxes from a carbon cycle data assimilation system (CCDAS): CARBON FLUXES FROM DATA ASSIMILATION SYSTEM journal June 2005
The perceptron: A probabilistic model for information storage and organization in the brain. journal January 1958
Synergistic algorithm for estimating vegetation canopy leaf area index and fraction of absorbed photosynthetically active radiation from MODIS and MISR data journal December 1998
A dynamic global vegetation model for studies of the coupled atmosphere-biosphere system: DVGM FOR COUPLED CLIMATE STUDIES journal February 2005
Atmospheric carbon dioxide at Mauna Loa Observatory: 2. Analysis of the NOAA GMCC data, 1974-1985 journal June 1989
Using satellite data to improve the leaf phenology of a global Terrestrial Biosphere Model journal January 2015
Causes of interannual variability in ecosystem–atmosphere CO2 exchange in a northern Wisconsin forest using a Bayesian model calibration journal February 2008
Recent trends and drivers of regional sources and sinks of carbon dioxide journal January 2015
Carbon dioxide in water and seawater: the solubility of a non-ideal gas journal November 1974
The ERA-Interim reanalysis: configuration and performance of the data assimilation system journal April 2011
Global Fire Emissions Database, Version 3.1 collection January 2013
Data-based estimates of the ocean carbon sink variability – first results of the Surface Ocean p CO 2 Mapping intercomparison (SOCOM) journal January 2015
Recent trends and drivers of regional sources and sinks of carbon dioxide text January 2015
Intercomparison of fraction of absorbed photosynthetically active radiation products derived from satellite data over Europe journal February 2014
A Comprehensive Mass Flux Scheme for Cumulus Parameterization in Large-Scale Models journal August 1989
Daily CO<sub>2</sub> flux estimates over Europe from continuous atmospheric measurements: 1, inverse methodology journal January 2005
Two decades of OH variability as inferred by an inversion of atmospheric transport and chemistry of methyl chloroform posted_content March 2005
Influences of observation errors in eddy flux data on inverse model parameter estimation journal January 2008
Uncertainty in model parameters and regional carbon fluxes: A model-data fusion approach journal June 2014
Estimating parameters in a land-surface model by applying nonlinear inversion to eddy covariance flux measurements from eight FLUXNET sites journal March 2007
Data-based estimates of the ocean carbon sink variability – first results of the Surface Ocean p CO 2 Mapping intercomparison (SOCOM) journal January 2015
Parameter estimation in surface exchange models using nonlinear inversion: how many parameters can we estimate and which measurements are most useful? journal May 2001
Anthropogenic perturbation of the carbon fluxes from land to ocean journal June 2013
Quantifying the model structural error in carbon cycle data assimilation systems posted_content August 2012
Revised estimates of the annual net flux of carbon to the atmosphere from changes in land use and land management 1850–2000 journal January 2003
Estimating parameters of a forest ecosystem C model with measurements of stocks and fluxes as joint constraints journal April 2010
Estimating diurnal to annual ecosystem parameters by synthesis of a carbon flux model with eddy covariance net ecosystem exchange observations journal February 2005
A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species journal June 1980
Assessing parameter variability in a photosynthesis model within and between plant functional types using global Fluxnet eddy covariance data journal January 2011
Atmospheric constraints on gross primary productivity and net ecosystem productivity: Results from a carbon-cycle data assimilation system: BIOSPHERE FLUXES INFERRED FROM A CCDAS journal March 2012
Global patterns of land-atmosphere fluxes of carbon dioxide, latent heat, and sensible heat derived from eddy covariance, satellite, and meteorological observations journal January 2011
Dynamics of C, N, P and S in grassland soils: a model journal February 1988
The Oceanic Sink for Anthropogenic CO2 journal July 2004

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Land surface model parameter optimisation using in situ flux data: comparison of gradient-based versus random search algorithms (a case study using ORCHIDEE v1.9.5.2) journal January 2018
Assessing the response of forest productivity to climate extremes in Switzerland using model–data fusion journal February 2020
Quantifying the value of surveillance data for improving model predictions of lymphatic filariasis elimination journal October 2018
Three decades of simulated global terrestrial carbon fluxes from a data assimilation system confronted with different periods of observations journal January 2019
Estimating global gross primary productivity using chlorophyll fluorescence and a data assimilation system with the BETHY-SCOPE model journal January 2019
Constraining estimates of terrestrial carbon uptake: new opportunities using long‐term satellite observations and data assimilation journal August 2019
Consistent assimilation of multiple data streams in a carbon cycle data assimilation system journal January 2016
Estimating global gross primary productivity using chlorophyll fluorescence and a data assimilation system with the BETHY-SCOPE model journal June 2018
Improving Estimates of Gross Primary Productivity by Assimilating Solar‐Induced Fluorescence Satellite Retrievals in a Terrestrial Biosphere Model Using a Process‐Based SIF Model journal November 2019
Reviews and syntheses: Systematic Earth observations for use in terrestrial carbon cycle data assimilation systems journal January 2017
Covariations between plant functional traits emerge from constraining parameterization of a terrestrial biosphere model journal May 2019
Understanding the Land Carbon Cycle with Space Data: Current Status and Prospects journal February 2019
Confronting Soil Moisture Dynamics from the ORCHIDEE Land Surface Model With the ESA-CCI Product: Perspectives for Data Assimilation journal November 2018
Coupling the Canadian Terrestrial Ecosystem Model (CTEM v. 2.0) to Environment and Climate Change Canada's greenhouse gas forecast model (v.107-glb) journal January 2018
Utilisation des traits fonctionnels au sein d'un modèle global de végétation : analyse de trois approches complémentaires axées sur les écosystèmes forestiers text January 2016
Parameter calibration and stomatal conductance formulation comparison for boreal forests with adaptive population importance sampler in the land surface model JSBACH journal January 2019
Strong constraint on modelled global carbon uptake using solar-induced chlorophyll fluorescence data journal January 2018
Evaluation and uncertainty analysis of regional-scale CLM4.5 net carbon flux estimates journal January 2018
Assimilating solar-induced chlorophyll fluorescence into the terrestrial biosphere model BETHY-SCOPE v1.0: model description and information content journal January 2018
Data Assimilation using an Ensemble of Models: A hierarchical approach journal February 2017
Reviews and syntheses: Systematic Earth observations for use in terrestrial carbon cycle data assimilation systems journal January 2017
Assimilation of river discharge in a land surface model to improve estimates of the continental water cycles posted_content January 2018
Assimilation of river discharge in a land surface model to improve estimates of the continental water cycles journal January 2018

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