skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Wide distribution of genes for tetrahydromethanopterin/methanofuran-linked C1 transfer reactions argues for their presence in the common ancestor of bacteria and archaea

Journal Article · · Frontiers in Microbiology
 [1]
  1. Univ. of Washington, Seattle, WA (United States)

In this opinion study, I wish to highlight the fact that reactions linked to tetrahydromethanopterin (H4MPT) and methanofuran (MF), the ones involved in methanogenesis as well as in methylotrophy, are much more widespread among both Bacteria and Archaea than originally thought.

Research Organization:
Univ. of Washington, Seattle, WA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
SC0010556
OSTI ID:
1361527
Journal Information:
Frontiers in Microbiology, Vol. 7; ISSN 1664-302X
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 15 works
Citation information provided by
Web of Science

References (45)

Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1T) journal August 2010
The Emergence and Early Evolution of Biological Carbon-Fixation journal April 2012
The Enigmatic Planctomycetes May Hold a Key to the Origins of Methanogenesis and Methylotrophy journal March 2004
Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics journal October 2015
Divergence with Genetic Exchange book October 2015
Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs journal December 2015
The Dispersed Archaeal Eukaryome and the Complex Archaeal Ancestor of Eukaryotes journal April 2014
Prokaryotic Evolution in Light of Gene Transfer journal December 2002
Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments: Genomic content of uncultured benthic Bathyarchaeota journal January 2016
D1FHS, the Type Strain of the Ammonia-Oxidizing Bacterium Nitrosococcus wardiae spec. nov.: Enrichment, Isolation, Phylogenetic, and Growth Physiological Characterization journal April 2016
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria journal March 2010
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction journal January 2016
Genes Lost and Genes Found: Evolution of Bacterial Pathogenesis and Symbiosis journal May 2001
The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes journal July 2014
A new view of the tree of life journal April 2016
The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park: Diversity of Thermoproteales journal May 2016
An archaeal genomic signature journal March 2000
The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign journal May 2015
Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’: Nitrosococcus watsonii journal January 2011
The Early Stage of Bacterial Genome-Reductive Evolution in the Host journal May 2010
Beating the acetyl coenzyme A-pathway to the origin of life journal July 2013
Modularity of methylotrophy, revisited: Modularity of methylotrophy, revisited journal March 2011
Complex archaea that bridge the gap between prokaryotes and eukaryotes journal May 2015
Identification and Characterization of a Tyramine–Glutamate Ligase (MfnD) Involved in Methanofuran Biosynthesis journal September 2014
Lateral Gene Transfer and the Origins of Prokaryotic Groups journal December 2003
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea journal February 2016
Biochemical Characterization of a Dihydromethanopterin Reductase Involved in Tetrahydromethanopterin Biosynthesis in Methylobacterium extorquens AM1 journal April 2004
Archaeal ancestors of eukaryotes: not so elusive any more journal October 2015
Metabolic traits of an uncultured archaeal lineage -MSBL1- from brine pools of the Red Sea journal January 2016
The small genome of an abundant coastal ocean methylotroph journal July 2008
Genome sequence of strain HIMB624, a cultured representative from the OM43 clade of marine Betaproteobacteria journal March 2012
The physiology and habitat of the last universal common ancestor journal July 2016
Evolution by gene loss journal April 2016
Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources journal May 2009
Complete Genome Sequence of the Haloalkaliphilic, Hydrogen-Producing Bacterium Halanaerobium hydrogeniformans journal May 2011
The One-carbon Carrier Methylofuran from Methylobacterium extorquens AM1 Contains a Large Number of α- and γ-Linked Glutamic Acid Residues journal February 2016
Analysis of Gene Islands Involved in Methanopterin-Linked C1 Transfer Reactions Reveals New Functions and Provides Evolutionary Insights journal June 2005
Complete Genome Sequence of the Marine, Chemolithoautotrophic, Ammonia-Oxidizing Bacterium Nitrosococcus oceani ATCC 19707 journal September 2006
Novel Methylotrophy Genes of Methylobacterium extorquens AM1 Identified by using Transposon Mutagenesis Including a Putative Dihydromethanopterin Reductase journal January 2003
Microbial Minimalism journal March 2002
An archaeal genomic signature journal March 2000
The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign text January 2015
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction text January 2016
Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources text January 2009
Distribution of Tetrahydromethanopterin-Dependent Enzymes in Methylotrophic Bacteria and Phylogeny of Methenyl Tetrahydromethanopterin Cyclohydrolases journal September 1999

Cited By (8)

Methanogenesis on Early Stages of Life: Ancient but Not Primordial journal December 2018
Methylofuran is a prosthetic group of the formyltransferase/hydrolase complex and shuttles one-carbon units between two active sites journal November 2019
Comparative genomics and transcriptomics insights into the C1 metabolic model of a formaldehyde-degrading strain Methylobacterium sp. XJLW journal January 2019
Role of the malic enzyme in metabolism of the halotolerant methanotroph Methylotuvimicrobium alcaliphilum 20Z journal November 2019
An archaeal origin of the Wood–Ljungdahl H4MPT branch and the emergence of bacterial methylotrophy journal August 2019
Methylofuran is a prosthetic group of the formyltransferase/hydrolase complex and shuttles one-carbon units between two active sites text January 2019
Substrate Specificity Analysis of Dihydrofolate/Dihydromethanopterin Reductase Homologs in Methylotrophic α-Proteobacteria journal October 2018
Evolutionary History of Copper Membrane Monooxygenases journal October 2018