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Title: High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment

Abstract

Sedimenticola selenatireducens strain AK4OH1 T (= DSM 17993 T = ATCC BAA-1233 T) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jersey and Staten Island, NY. S. selenatireducens is Gram-negative and belongs to the Gammaproteobacteria. Strain AK4OH1 T was the first representative of its genus to be isolated for its unique coupling of the oxidation of aromatic acids to the respiration of selenate. It is a versatile heterotroph and can use a variety of carbon compounds, but can also grow lithoautotrophically under hypoxic and anaerobic conditions. Furthermore, the draft genome comprises 4,588,530 bp and 4276 predicted protein-coding genes including genes for the anaerobic degradation of 4-hydroxybenzoate and benzoate. We report the main features of the genome of S. selenatireducens strain AK4OH1 T.

Authors:
 [1];  [2];  [3];  [1];  [4];  [5];  [6];  [5];  [7];  [8];  [9];  [1]
  1. Rutgers Univ., New Brunswick, NJ (United States). Dept. of Biochemistry and Microbiology
  2. Rutgers Univ., New Brunswick, NJ (United States). Inst. of Earth Ocean and Atmospheric Science; National Research Council (CNR), Ancona (Italy). Marine Science Institute (ISMAR); Inst. for Advanced Studies, Princeton, NJ (United States)
  3. Rutgers Univ., New Brunswick, NJ (United States). Dept. of Environmental Sciences
  4. Rutgers Univ., Piscataway, NJ (United States). Dept. of Cell Biology and Neuroscience
  5. Leibniz Inst. DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  6. Leibniz Inst. DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany); Newcastle Univ. (United Kingdom)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Biological Sciences
  8. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  9. Rutgers Univ., Piscataway, NJ (United States). Pharmacy Practice and Administration; Univ. of Minnesota, Minneapolis, MN (United States). Dept. of Biochemistry, Molecular Biology and Biophysics
Publication Date:
Research Org.:
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1360720
Grant/Contract Number:
AC02-05CH11231
Resource Type:
Journal Article: Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 11; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; Sedimenticola selenatireducens; Gammaproteobacteria; Anaerobe; Selenate respiration; 4-hydroxybenzoate

Citation Formats

Louie, Tiffany S., Giovannelli, Donato, Yee, Nathan, Narasingarao, Priya, Starovoytov, Valentin, Göker, Markus, Klenk, Hans-Peter, Lang, Elke, Kyrpides, Nikos C., Woyke, Tanja, Bini, Elisabetta, and Häggblom, Max M. High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment. United States: N. p., 2016. Web. doi:10.1186/s40793-016-0191-5.
Louie, Tiffany S., Giovannelli, Donato, Yee, Nathan, Narasingarao, Priya, Starovoytov, Valentin, Göker, Markus, Klenk, Hans-Peter, Lang, Elke, Kyrpides, Nikos C., Woyke, Tanja, Bini, Elisabetta, & Häggblom, Max M. High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment. United States. doi:10.1186/s40793-016-0191-5.
Louie, Tiffany S., Giovannelli, Donato, Yee, Nathan, Narasingarao, Priya, Starovoytov, Valentin, Göker, Markus, Klenk, Hans-Peter, Lang, Elke, Kyrpides, Nikos C., Woyke, Tanja, Bini, Elisabetta, and Häggblom, Max M. 2016. "High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment". United States. doi:10.1186/s40793-016-0191-5. https://www.osti.gov/servlets/purl/1360720.
@article{osti_1360720,
title = {High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment},
author = {Louie, Tiffany S. and Giovannelli, Donato and Yee, Nathan and Narasingarao, Priya and Starovoytov, Valentin and Göker, Markus and Klenk, Hans-Peter and Lang, Elke and Kyrpides, Nikos C. and Woyke, Tanja and Bini, Elisabetta and Häggblom, Max M.},
abstractNote = {Sedimenticola selenatireducens strain AK4OH1T (= DSM 17993T = ATCC BAA-1233T) is a microaerophilic bacterium isolated from sediment from the Arthur Kill intertidal strait between New Jersey and Staten Island, NY. S. selenatireducens is Gram-negative and belongs to the Gammaproteobacteria. Strain AK4OH1T was the first representative of its genus to be isolated for its unique coupling of the oxidation of aromatic acids to the respiration of selenate. It is a versatile heterotroph and can use a variety of carbon compounds, but can also grow lithoautotrophically under hypoxic and anaerobic conditions. Furthermore, the draft genome comprises 4,588,530 bp and 4276 predicted protein-coding genes including genes for the anaerobic degradation of 4-hydroxybenzoate and benzoate. We report the main features of the genome of S. selenatireducens strain AK4OH1T.},
doi = {10.1186/s40793-016-0191-5},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 11,
place = {United States},
year = 2016,
month = 9
}

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