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Title: Reconstruction of a Nearly Complete Pseudomonas Draft Genome Sequence from a Coalbed Methane-Produced Water Metagenome

Journal Article · · Genome Announcements
ORCiD logo [1];  [2]
  1. National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)
  2. AECOM Technology Corporation, Pittsburgh, PA (United States)
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The draft genome sequence ofPseudomonas stutzeristrain K35 was separated from a metagenome derived from a produced water microbial community of a coalbed methane well. The genome encodes a complete nitrogen fixation pathway and the upper and lower naphthalene degradation pathways.

Research Organization:
National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)
Sponsoring Organization:
USDOE
OSTI ID:
1337544
Report Number(s):
NETL-PUB-20630
Journal Information:
Genome Announcements, Vol. 4, Issue 5; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (8)

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
Complete Genome Sequence of the Naphthalene-Degrading Bacterium Pseudomonas stutzeri AN10 (CCUG 29243) journal November 2012
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes journal January 2011
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing journal May 2012
PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data journal March 2013
VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data journal January 2015
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes journal February 2015

Cited By (2)

New approaches for metagenome assembly with short reads journal February 2019
Bioconversion of coal to methane by microbial communities from soil and from an opencast mine in the Xilingol grassland of northeast China journal October 2019

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Draft Genome
Coalbed Methane
microbiology