Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

Berben, Tom; Sorokin, Dimitry Y.; Ivanova, Natalia; Pati, Amrita; Kyrpides, Nikos; Goodwin, Lynne A.; Woyke, Tanja; Muyzer, Gerard

doi:10.1186/s40793-015-0080-3

Title: Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1^T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

Journal Article · Mon Oct 26 00:00:00 EDT 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-015-0080-3· OSTI ID:1323224

Berben, Tom ^[1]; Sorokin, Dimitry Y. ^[2]; Ivanova, Natalia ^[3]; Pati, Amrita ^[3]; Kyrpides, Nikos ^[3]; Goodwin, Lynne A. ^[3]; Woyke, Tanja ^[3];

^[1]

Univ. of Amsterdam, Amsterdam (The Netherlands)
Winogradsky Institute of Microbiology, Moscow (Russia); Delft Univ. of Technology, Delft (The Netherlands)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

Â© 2015 Berben et al. Thioalkalivibrio thiocyanodenitrificans strain ARhD 1 T is a motile, Gram-negative bacterium isolated from soda lakes that belongs to the Gammaproteobacteria. It derives energy for growth and carbon fixation from the oxidation of sulfur compounds, most notably thiocyanate, and so is a chemolithoautotroph. It is capable of complete denitrification under anaerobic conditions. The draft genome sequence consists of 3,746,647 bp in 3 scaffolds, containing 3558 proteincoding and 121 RNA genes. T. thiocyanodenitrificans ARhD 1 T was sequenced as part of the DOE Joint Genome Institute Community Science Program.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1323224

Alternate ID(s):: OSTI ID: 1378606

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 3 works

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Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes Berben, Tom; Overmars, Lex; Sorokin, Dimitry Y. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00254	journal	February 2017

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Title: Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

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Title: Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1^T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification