Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae
Abstract
Secondary bacterial infections are a leading cause of illness and death during epidemic and pandemic influenza. Experimental studies suggest a lethal synergism between influenza and certain bacteria, particularly Streptococcus pneumoniae, but the precise processes involved are unclear. In this paper, to address the mechanisms and determine the influences of pathogen dose and strain on disease, we infected groups of mice with either the H1N1 subtype influenza A virus A/Puerto Rico/8/34 (PR8) or a version expressing the 1918 PB1-F2 protein (PR8-PB1-F2(1918)), followed seven days later with one of two S. pneumoniae strains, type 2 D39 or type 3 A66.1. We determined that, following bacterial infection, viral titers initially rebound and then decline slowly. Bacterial titers rapidly rise to high levels and remain elevated. We used a kinetic model to explore the coupled interactions and study the dominant controlling mechanisms. We hypothesize that viral titers rebound in the presence of bacteria due to enhanced viral release from infected cells, and that bacterial titers increase due to alveolar macrophage impairment. Dynamics are affected by initial bacterial dose but not by the expression of the influenza 1918 PB1-F2 protein. Finally, our model provides a framework to investigate pathogen interaction during coinfections and to uncovermore »
- Authors:
-
- St. Jude Children's Research Hospital, Memphis, TN (United States). Dept. of Infectious Diseases
- Univ. of Utah, Salt Lake City, UT (United States). Dept. of Mathematics. Dept. of Biology
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Theoretical Biology and Biophysics; Univ. of Lisbon (Portugal). School of Medicine. Inst. of Molecular Medicine
- Univ. of Arizona, Tucson, AZ (United States). Dept. of Molecular and Cellular Biology
- Univ. of Melbourne (Australia). Dept. of Immunology and Microbiology
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Theoretical Biology and Biophysics
- Publication Date:
- Research Org.:
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
- Sponsoring Org.:
- USDOE; National Inst. of Health (NIH) (United States); National Science Foundation (NSF); James S. McDonnell Foundation (United States); Foundation for Science and Technology (FCT) (Portugal)
- Contributing Org.:
- St. Jude Children's Research Hospital, Memphis, TN (United States); Univ. of Utah, Salt Lake City, UT (United States); Univ. of Arizona, Tucson, AZ (United States); Univ. of Melbourne (Australia)
- OSTI Identifier:
- 1321716
- Report Number(s):
- LA-UR-12-21471
Journal ID: ISSN 1553-7374
- Grant/Contract Number:
- AC52-06NA25396; HHSN272201000055C; OD011095; AI028433; AI100946; P20-GM103452; DMS-0354259; PCOFUND-GA-2009-246542
- Resource Type:
- Journal Article: Accepted Manuscript
- Journal Name:
- PLoS Pathogens
- Additional Journal Information:
- Journal Volume: 9; Journal Issue: 3; Journal ID: ISSN 1553-7374
- Publisher:
- Public Library of Science
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; biological science; influenza; co-infections; pneumococcus; alveolar macrophages; bacterial diseases; influenza A virus; influenza viruses; bacterial pathogens
Citation Formats
Smith, Amber M., Adler, Frederick R., Ribeiro, Ruy M., Gutenkunst, Ryan N., McAuley, Julie L., McCullers, Jonathan A., and Perelson, Alan S. Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae. United States: N. p., 2013.
Web. doi:10.1371/journal.ppat.1003238.
Smith, Amber M., Adler, Frederick R., Ribeiro, Ruy M., Gutenkunst, Ryan N., McAuley, Julie L., McCullers, Jonathan A., & Perelson, Alan S. Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae. United States. https://doi.org/10.1371/journal.ppat.1003238
Smith, Amber M., Adler, Frederick R., Ribeiro, Ruy M., Gutenkunst, Ryan N., McAuley, Julie L., McCullers, Jonathan A., and Perelson, Alan S. Thu .
"Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae". United States. https://doi.org/10.1371/journal.ppat.1003238. https://www.osti.gov/servlets/purl/1321716.
@article{osti_1321716,
title = {Kinetics of Coinfection with Influenza A Virus and Streptococcus pneumoniae},
author = {Smith, Amber M. and Adler, Frederick R. and Ribeiro, Ruy M. and Gutenkunst, Ryan N. and McAuley, Julie L. and McCullers, Jonathan A. and Perelson, Alan S.},
abstractNote = {Secondary bacterial infections are a leading cause of illness and death during epidemic and pandemic influenza. Experimental studies suggest a lethal synergism between influenza and certain bacteria, particularly Streptococcus pneumoniae, but the precise processes involved are unclear. In this paper, to address the mechanisms and determine the influences of pathogen dose and strain on disease, we infected groups of mice with either the H1N1 subtype influenza A virus A/Puerto Rico/8/34 (PR8) or a version expressing the 1918 PB1-F2 protein (PR8-PB1-F2(1918)), followed seven days later with one of two S. pneumoniae strains, type 2 D39 or type 3 A66.1. We determined that, following bacterial infection, viral titers initially rebound and then decline slowly. Bacterial titers rapidly rise to high levels and remain elevated. We used a kinetic model to explore the coupled interactions and study the dominant controlling mechanisms. We hypothesize that viral titers rebound in the presence of bacteria due to enhanced viral release from infected cells, and that bacterial titers increase due to alveolar macrophage impairment. Dynamics are affected by initial bacterial dose but not by the expression of the influenza 1918 PB1-F2 protein. Finally, our model provides a framework to investigate pathogen interaction during coinfections and to uncover dynamical differences based on inoculum size and strain.},
doi = {10.1371/journal.ppat.1003238},
url = {https://www.osti.gov/biblio/1321716},
journal = {PLoS Pathogens},
issn = {1553-7374},
number = 3,
volume = 9,
place = {United States},
year = {2013},
month = {3}
}
Web of Science
Works referenced in this record:
Predominant Role of Bacterial Pneumonia as a Cause of Death in Pandemic Influenza: Implications for Pandemic Influenza Preparedness
journal, October 2008
- Morens, David M.; Taubenberger, Jeffery K.; Fauci, Anthony S.
- The Journal of Infectious Diseases, Vol. 198, Issue 7
Studies on Influenza in the Pandemic of 1957-1958. ii. Pulmonary Complications of Influenza*†
journal, January 1959
- Louria, Donald B.; Blumenfeld, Herbert L.; Ellis, John T.
- Journal of Clinical Investigation, Vol. 38, Issue 1 Pt 1-2
Impact of the 2009 Influenza Pandemic on Pneumococcal Pneumonia Hospitalizations in the United States
journal, December 2011
- Weinberger, Daniel M.; Simonsen, Lone; Jordan, Richard
- The Journal of Infectious Diseases, Vol. 205, Issue 3
Improving therapeutic strategies for secondary bacterial pneumonia following influenza
journal, August 2008
- McCullers, Jonathan A.; English, B. Keith
- Future Microbiology, Vol. 3, Issue 4
Insights into the Interaction between Influenza Virus and Pneumococcus
journal, July 2006
- McCullers, J. A.
- Clinical Microbiology Reviews, Vol. 19, Issue 3
Lethal Synergism between Influenza Virus and Streptococcus pneumoniae: Characterization of a Mouse Model and the Role of Platelet‐Activating Factor Receptor
journal, August 2002
- McCullers, Jonathan A.; Rehg, Jerold E.
- The Journal of Infectious Diseases, Vol. 186, Issue 3
Bacterial Sinusitis and Otitis Media following Influenza Virus Infection in Ferrets
journal, April 2006
- Peltola, V. T.; Boyd, K. L.; McAuley, J. L.
- Infection and Immunity, Vol. 74, Issue 5
Mathematical model of a three-stage innate immune response to a pneumococcal lung infection
journal, May 2011
- Smith, Amber M.; McCullers, Jonathan A.; Adler, Frederick R.
- Journal of Theoretical Biology, Vol. 276, Issue 1
Expression of the 1918 Influenza A Virus PB1-F2 Enhances the Pathogenesis of Viral and Secondary Bacterial Pneumonia
journal, October 2007
- McAuley, Julie L.; Hornung, Felicita; Boyd, Kelli L.
- Cell Host & Microbe, Vol. 2, Issue 4
Role of Neuraminidase in Lethal Synergism between Influenza Virus and Streptococcus pneumoniae
journal, March 2003
- McCullers, Jonathan A.; Bartmess, Kimberly C.
- The Journal of Infectious Diseases, Vol. 187, Issue 6
Influenza Virus Infection Decreases Tracheal Mucociliary Velocity and Clearance of Streptococcus pneumoniae
journal, April 2010
- Pittet, Lynnelle A.; Hall-Stoodley, Luanne; Rutkowski, Melanie R.
- American Journal of Respiratory Cell and Molecular Biology, Vol. 42, Issue 4
Influenza Virus Neuraminidase Contributes to Secondary Bacterial Pneumonia
journal, July 2005
- Peltola, Ville T.; Murti, K. Gopal; McCullers, Jonathan A.
- The Journal of Infectious Diseases, Vol. 192, Issue 2
Increased susceptibility to bacterial superinfection as a consequence of innate antiviral responses
journal, October 2006
- Navarini, A. A.; Recher, M.; Lang, K. S.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 42
Both Influenza-Induced Neutrophil Dysfunction and Neutrophil-Independent Mechanisms Contribute to Increased Susceptibility to a Secondary Streptococcus pneumoniae Infection
journal, September 2006
- McNamee, L. A.; Harmsen, A. G.
- Infection and Immunity, Vol. 74, Issue 12
Respiratory viruses predisposing to bacterial infections: role of neuraminidase
journal, January 2004
- Peltola, Ville T.; Mccullers, Jonathan A.
- The Pediatric Infectious Disease Journal, Vol. 23, Issue Supplement
Synergistic stimulation of type I interferons during influenza virus coinfection promotes Streptococcus pneumoniae colonization in mice
journal, September 2011
- Nakamura, Shigeki; Davis, Kimberly M.; Weiser, Jeffrey N.
- Journal of Clinical Investigation, Vol. 121, Issue 9
Type I IFNs mediate development of postinfluenza bacterial pneumonia in mice
journal, July 2009
- Shahangian, Arash; Chow, Edward K.; Tian, Xiaoli
- Journal of Clinical Investigation, Vol. 119, Issue 7
Immunokinetics in severe pneumonia due to influenza virus and bacteria coinfection in mice
journal, July 2004
- Seki, M.; Yanagihara, K.; Higashiyama, Y.
- European Respiratory Journal, Vol. 24, Issue 1
IL-10 Is an Important Mediator of the Enhanced Susceptibility to Pneumococcal Pneumonia after Influenza Infection
journal, June 2004
- van der Sluijs, Koenraad F.; van Elden, Leontine J. R.; Nijhuis, Monique
- The Journal of Immunology, Vol. 172, Issue 12
Sustained desensitization to bacterial Toll-like receptor ligands after resolutionof respiratory influenza infection
journal, January 2008
- Didierlaurent, Arnaud; Goulding, John; Patel, Seema
- The Journal of Experimental Medicine, Vol. 205, Issue 2
Influenza Virus-Induced Glucocorticoids Compromise Innate Host Defense against a Secondary Bacterial Infection
journal, February 2010
- Jamieson, Amanda M.; Yu, Shuang; Annicelli, Charles H.
- Cell Host & Microbe, Vol. 7, Issue 2
Inhibition of pulmonary antibacterial defense by interferon-γ during recovery from influenza infection
journal, April 2008
- Sun, Keer; Metzger, Dennis W.
- Nature Medicine, Vol. 14, Issue 5
Phagocytosis and Killing of Common Bacterial Pathogens of the Lung by Human Alveolar Macrophages
journal, July 1985
- Jonsson, S.; Musher, D. M.; Chapman, A.
- Journal of Infectious Diseases, Vol. 152, Issue 1
Alveolar Macrophages Have a Protective Antiinflammatory Role during Murine Pneumococcal Pneumonia
journal, January 2003
- Knapp, Sylvia; Leemans, Jaklien C.; Florquin, Sandrine
- American Journal of Respiratory and Critical Care Medicine, Vol. 167, Issue 2
Role of Chemokines and Formyl Peptides in Pneumococcal Pneumonia-Induced Monocyte/Macrophage Recruitment
journal, June 2001
- Fillion, Isabelle; Ouellet, Nathalie; Simard, Marie
- The Journal of Immunology, Vol. 166, Issue 12
Effect of Avian Influenza Virus Infection on the Phagocytic Function of Systemic Phagocytes and Pulmonary Macrophages of Turkeys
journal, January 1994
- Kodihalli, S.; Sivanandan, V.; Nagaraja, K. V.
- Avian Diseases, Vol. 38, Issue 1
A novel influenza A virus mitochondrial protein that induces cell death
journal, December 2001
- Chen, Weisan; Calvo, Paul A.; Malide, Daniela
- Nature Medicine, Vol. 7, Issue 12
Filamentous Influenza A Virus Infection Predisposes Mice to Fatal Septicemia following Superinfection with Streptococcus pneumoniae Serotype 3
journal, April 2007
- Speshock, J. L.; Doyon-Reale, N.; Rabah, R.
- Infection and Immunity, Vol. 75, Issue 6
A Single N66S Mutation in the PB1-F2 Protein of Influenza A Virus Increases Virulence by Inhibiting the Early Interferon Response In Vivo
journal, November 2010
- Conenello, G. M.; Tisoncik, J. R.; Rosenzweig, E.
- Journal of Virology, Vol. 85, Issue 2
PB1-F2 Proteins from H5N1 and 20th Century Pandemic Influenza Viruses Cause Immunopathology
journal, July 2010
- McAuley, Julie L.; Chipuk, Jerry E.; Boyd, Kelli L.
- PLoS Pathogens, Vol. 6, Issue 7
Influenza A Virus Protein PB1-F2 Exacerbates IFN-β Expression of Human Respiratory Epithelial Cells
journal, September 2010
- Le Goffic, Ronan; Bouguyon, Edwige; Chevalier, Christophe
- The Journal of Immunology, Vol. 185, Issue 8
The Influenza A Virus PB1-F2 Protein Targets the Inner Mitochondrial Membrane via a Predicted Basic Amphipathic Helix That Disrupts Mitochondrial Function
journal, July 2003
- Gibbs, J. S.; Malide, D.; Hornung, F.
- Journal of Virology, Vol. 77, Issue 13
Influenza Virus PB1-F2 Protein Induces Cell Death through Mitochondrial ANT3 and VDAC1
journal, January 2005
- Zamarin, Dmitriy; García-Sastre, Adolfo; Xiao, Xiaoyao
- PLoS Pathogens, Vol. 1, Issue 1
A review of mathematical models of influenza A infections within a host or cell culture: lessons learned and challenges ahead
journal, January 2011
- Beauchemin, Catherine AA; Handel, Andreas
- BMC Public Health, Vol. 11, Issue Suppl 1
Modeling the Viral Dynamics of Influenza A Virus Infection
journal, January 2010
- Smith, Amber M.; Ribeiro, Ruy M.
- Critical Reviews™ in Immunology, Vol. 30, Issue 3
Influenza A virus infection kinetics: quantitative data and models: Modeling influenza kinetics
journal, December 2010
- Smith, Amber M.; Perelson, Alan S.
- Wiley Interdisciplinary Reviews: Systems Biology and Medicine, Vol. 3, Issue 4
Effect of 1918 PB1-F2 Expression on Influenza A Virus Infection Kinetics
journal, February 2011
- Smith, Amber M.; Adler, Frederick R.; McAuley, Julie L.
- PLoS Computational Biology, Vol. 7, Issue 2
Naturally Occurring Swine Influenza A Virus PB1-F2 Phenotypes That Contribute to Superinfection with Gram-Positive Respiratory Pathogens
journal, June 2012
- Weeks-Gorospe, J. N.; Hurtig, H. R.; Iverson, A. R.
- Journal of Virology, Vol. 86, Issue 17
Statistical mechanical approaches to models with many poorly known parameters
journal, August 2003
- Brown, Kevin S.; Sethna, James P.
- Physical Review E, Vol. 68, Issue 2
An accurate two-phase approximate solution to an acute viral infection model
journal, July 2009
- Smith, Amber M.; Adler, Frederick R.; Perelson, Alan S.
- Journal of Mathematical Biology, Vol. 60, Issue 5
Influenza Alone and in Sequence with Pneumonia Due to Streptococcus pneumoniae in the Squirrel Monkey
journal, December 1975
- Berendt, R. F.; Long, G. G.; Walker, J. S.
- Journal of Infectious Diseases, Vol. 132, Issue 6
Combined Infections in mice with Influenza Virus and Diplococcus Pneumoniae
journal, November 1957
- Gerone, Peter J.; Ward, Thomas G.; Chappal, W. Adrian
- American Journal of Epidemiology, Vol. 66, Issue 3
Pulmonary and Systemic Defenses against Challenge with Staphylococcus aureus in Mice with Pneumonia Due to Influenza A Virus
journal, July 1979
- Jakab, G. J.; Warr, G. A.; Knight, M. E.
- Journal of Infectious Diseases, Vol. 140, Issue 1
Influenza Virus Primes Mice for Pneumonia From Staphylococcus aureus
journal, March 2011
- Iverson, Amy R.; Boyd, Kelli L.; McAuley, Julie L.
- The Journal of Infectious Diseases, Vol. 203, Issue 6
Influenza Enhances Susceptibility to Natural Acquisition of and Disease due to Streptococcus pneumoniae in Ferrets
journal, October 2010
- McCullers, Jonathan A.; McAuley, Julie L.; Browall, Sarah
- The Journal of Infectious Diseases, Vol. 202, Issue 8
Commensal Bacteria Calibrate the Activation Threshold of Innate Antiviral Immunity
journal, July 2012
- Abt, Michael C.; Osborne, Lisa C.; Monticelli, Laurel A.
- Immunity, Vol. 37, Issue 1
Influenza A virus facilitates Streptococcus pneumoniae transmission and disease
journal, June 2010
- Diavatopoulos, Dimitri A.; Short, Kirsty R.; Price, John T.
- The FASEB Journal, Vol. 24, Issue 6
Microbiota regulates immune defense against respiratory tract influenza A virus infection
journal, March 2011
- Ichinohe, T.; Pang, I. K.; Kumamoto, Y.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 13
Critically Ill Patients With 2009 Influenza A(H1N1) in Mexico
journal, November 2009
- Domínguez-Cherit, Guillermo
- JAMA, Vol. 302, Issue 17
Hospitalized Patients with 2009 H1N1 Influenza in the United States, April–June 2009
journal, November 2009
- Jain, Seema; Kamimoto, Laurie; Bramley, Anna M.
- New England Journal of Medicine, Vol. 361, Issue 20
No apoptotic deaths and different levels of inductions of inflammatory cytokines in alveolar macrophages infected with influenza viruses
journal, November 2004
- Seo, Sang Heui; Webby, Richard; Webster, Robert G.
- Virology, Vol. 329, Issue 2
The impact of successive infections on the lung microenvironment
journal, December 2007
- Didierlaurent, Arnaud; Goulding, John; Hussell, Tracy
- Immunology, Vol. 122, Issue 4
Successive influenza virus infection and Streptococcus pneumoniae stimulation alter human dendritic cell function
journal, July 2011
- Wu, Yuet; Mao, Huawei; Ling, Man-To
- BMC Infectious Diseases, Vol. 11, Issue 1
Influenza Infection Leads to Increased Susceptibility to Subsequent Bacterial Superinfection by Impairing NK Cell Responses in the Lung
journal, January 2010
- Small, Cherrie-Lee; Shaler, Christopher R.; McCormick, Sarah
- The Journal of Immunology, Vol. 184, Issue 4
Influenza A Inhibits Th17-Mediated Host Defense against Bacterial Pneumonia in Mice
journal, December 2010
- Kudva, Anupa; Scheller, Erich V.; Robinson, Keven M.
- The Journal of Immunology, Vol. 186, Issue 3
Bordetella pertussis Infection Exacerbates Influenza Virus Infection through Pertussis Toxin-Mediated Suppression of Innate Immunity
journal, April 2011
- Ayala, Victor I.; Teijaro, John R.; Farber, Donna L.
- PLoS ONE, Vol. 6, Issue 4
A Simple Method of Estimating Fifty per cent Endpoints12
journal, May 1938
- Reed, L. J.; Muench, H.
- American Journal of Epidemiology, Vol. 27, Issue 3
Kinetics of Influenza A Virus Infection in Humans
journal, July 2006
- Baccam, P.; Beauchemin, C.; Macken, C. A.
- Journal of Virology, Vol. 80, Issue 15
Binding of bacteria to HEp-2 cells infected with influenza A virus
journal, April 1999
- El Ahmer, O.
- FEMS Immunology and Medical Microbiology, Vol. 23, Issue 4
Effect of Neuraminidase on Receptor-mediated Adherence of Streptococcus pneumoniae to Chinchilla Tracheal Epithelium
journal, January 2002
- Tong, Hua Hua; Liu, Xia; Chen, Yiping
- Acta Oto-Laryngologica, Vol. 122, Issue 4
Host Cellular Immune Response to Pneumococcal Lung Infection in Mice
journal, February 2000
- Kadioglu, A.; Gingles, N. A.; Grattan, K.
- Infection and Immunity, Vol. 68, Issue 2
Influenza virus neuraminidase inhibitors
journal, March 2000
- Gubareva, Larisa V.; Kaiser, Laurent; Hayden, Frederick G.
- The Lancet, Vol. 355, Issue 9206
Python Unleashed on Systems Biology
journal, January 2007
- Myers, Christopher R.; Gutenkunst, Ryan N.; Sethna, James P.
- Computing in Science & Engineering, Vol. 9, Issue 3
Regression and time series model selection in small samples
journal, January 1989
- Hurvich, Clifford M.; Tsai, Chih-Ling
- Biometrika, Vol. 76, Issue 2
Works referencing / citing this record:
De novo assembly of Sockeye salmon kidney transcriptomes reveal a limited early response to piscine reovirus with or without infectious hematopoietic necrosis virus superinfection
journal, November 2016
- Polinski, Mark P.; Bradshaw, Julia C.; Inkpen, Sabrina M.
- BMC Genomics, Vol. 17, Issue 1
Mathematical modeling of within-host Zika virus dynamics
journal, August 2018
- Best, Katharine; Perelson, Alan S.
- Immunological Reviews, Vol. 285, Issue 1
Host-pathogen kinetics during influenza infection and coinfection: insights from predictive modeling
journal, August 2018
- Smith, Amber M.
- Immunological Reviews, Vol. 285, Issue 1
Mathematical modeling of within-host Zika virus dynamics
journal, August 2018
- Best, Katharine; Perelson, Alan S.
- Immunological Reviews, Vol. 285, Issue 1
Host-pathogen kinetics during influenza infection and coinfection: insights from predictive modeling
journal, August 2018
- Smith, Amber M.
- Immunological Reviews, Vol. 285, Issue 1
De novo assembly of Sockeye salmon kidney transcriptomes reveal a limited early response to piscine reovirus with or without infectious hematopoietic necrosis virus superinfection
journal, November 2016
- Polinski, Mark P.; Bradshaw, Julia C.; Inkpen, Sabrina M.
- BMC Genomics, Vol. 17, Issue 1
Impact of the H275Y and I223V Mutations in the Neuraminidase of the 2009 Pandemic Influenza Virus In Vitro and Evaluating Experimental Reproducibility
journal, May 2015
- Paradis, Eric G.; Pinilla, Lady Tatiana; Holder, Benjamin P.
- PLOS ONE, Vol. 10, Issue 5
Multiplicity of Mathematical Modeling Strategies to Search for Molecular and Cellular Insights into Bacteria Lung Infection
journal, August 2017
- Cantone, Martina; Santos, Guido; Wentker, Pia
- Frontiers in Physiology, Vol. 8
Modeling Influenza Virus Infection: A Roadmap for Influenza Research
journal, October 2015
- Boianelli, Alessandro; Nguyen, Van; Ebensen, Thomas
- Viruses, Vol. 7, Issue 10
A review of inflammatory mechanism in airway diseases
journal, October 2018
- Aghasafari, Parya; George, Uduak; Pidaparti, Ramana
- Inflammation Research, Vol. 68, Issue 1
Mathematical Models for Immunology: Current State of the Art and Future Research Directions
journal, October 2016
- Eftimie, Raluca; Gillard, Joseph J.; Cantrell, Doreen A.
- Bulletin of Mathematical Biology, Vol. 78, Issue 10
Prevalence and clinical impact of VIral Respiratory tract infections in patients hospitalized for Community-Acquired Pneumonia: the VIRCAP study
journal, November 2019
- Tatarelli, P.; Magnasco, L.; Borghesi, M. L.
- Internal and Emergency Medicine, Vol. 15, Issue 4
The co-pathogenesis of influenza viruses with bacteria in the lung
journal, March 2014
- McCullers, Jonathan A.
- Nature Reviews Microbiology, Vol. 12, Issue 4
Simulation modelling for immunologists
journal, December 2019
- Handel, Andreas; La Gruta, Nicole L.; Thomas, Paul G.
- Nature Reviews Immunology, Vol. 20, Issue 3
Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children
journal, July 2018
- Morpeth, Susan C.; Munywoki, Patrick; Hammitt, Laura L.
- Scientific Reports, Vol. 8, Issue 1
The role of influenza in the epidemiology of pneumonia
journal, October 2015
- Shrestha, Sourya; Foxman, Betsy; Berus, Joshua
- Scientific Reports, Vol. 5, Issue 1
Hierarchical effects of pro-inflammatory cytokines on the post-influenza susceptibility to pneumococcal coinfection
journal, November 2016
- Duvigneau, Stefanie; Sharma-Chawla, Niharika; Boianelli, Alessandro
- Scientific Reports, Vol. 6, Issue 1
Complex dynamics of synergistic coinfections on realistically clustered networks
journal, July 2015
- Hébert-Dufresne, Laurent; Althouse, Benjamin M.
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 33
Fundamental properties of cooperative contagion processes
journal, October 2017
- Chen, Li; Ghanbarnejad, Fakhteh; Brockmann, Dirk
- New Journal of Physics, Vol. 19, Issue 10
Viral bacterial co-infection of the respiratory tract during early childhood
journal, May 2015
- Brealey, Jaelle C.; Sly, Peter D.; Young, Paul R.
- FEMS Microbiology Letters, Vol. 362, Issue 10
Dynamic Virus-Bacterium Interactions in a Porcine Precision-Cut Lung Slice Coinfection Model: Swine Influenza Virus Paves the Way for Streptococcus suis Infection in a Two-Step Process
journal, April 2015
- Meng, F.; Wu, N. H.; Nerlich, A.
- Infection and Immunity, Vol. 83, Issue 7
Capsular Sialic Acid of Streptococcus suis Serotype 2 Binds to Swine Influenza Virus and Enhances Bacterial Interactions with Virus-Infected Tracheal Epithelial Cells
journal, September 2013
- Wang, Yingchao; Gagnon, Carl A.; Savard, Christian
- Infection and Immunity, Vol. 81, Issue 12
Critical Role of HAX-1 in Promoting Avian Influenza Virus Replication in Lung Epithelial Cells
journal, January 2018
- Li, Xue; Qu, Bingqian; He, Ganlin
- Mediators of Inflammation, Vol. 2018
Impact of microbial Aetiology on mortality in severe community-acquired pneumonia
journal, September 2018
- Quah, Jessica; Jiang, Boran; Tan, Poh Choo
- BMC Infectious Diseases, Vol. 18, Issue 1
Influenza interaction with cocirculating pathogens and its impact on surveillance, pathogenesis, and epidemic profile: A key role for mathematical modelling
journal, February 2018
- Opatowski, Lulla; Baguelin, Marc; Eggo, Rosalind M.
- PLOS Pathogens, Vol. 14, Issue 2
Influenza A Virus as a Predisposing Factor for Cryptococcosis
journal, September 2017
- Oliveira, Lorena V. N.; Costa, Marliete C.; Magalhães, Thaís F. F.
- Frontiers in Cellular and Infection Microbiology, Vol. 7
Back to the Future: Lessons Learned From the 1918 Influenza Pandemic
journal, October 2018
- Short, Kirsty R.; Kedzierska, Katherine; van de Sandt, Carolien E.
- Frontiers in Cellular and Infection Microbiology, Vol. 8
Influenza Virus Infection Model With Density Dependence Supports Biphasic Viral Decay
journal, July 2018
- Smith, Amanda P.; Moquin, David J.; Bernhauerova, Veronika
- Frontiers in Microbiology, Vol. 9
Contribution of Host Immune Responses Against Influenza D Virus Infection Toward Secondary Bacterial Infection in a Mouse Model
journal, October 2019
- Skelton, Raegan M.; Shepardson, Kelly M.; Hatton, Alexis
- Viruses, Vol. 11, Issue 11
IL-1 Signaling Prevents Alveolar Macrophage Depletion during Influenza and Streptococcus pneumoniae Coinfection
journal, January 2018
- Bansal, Shruti; Yajjala, Vijaya Kumar; Bauer, Christopher
- The Journal of Immunology, Vol. 200, Issue 4