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Title: Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum

Journal Article · · Genome Announcements
 [1];  [2];  [3];  [4];  [5];  [3];  [6];  [1]
  1. Univ. of Missouri, Columbia, MO (United States). Division of Biochemistry
  2. Univ. of Tennessee, Knoxville, TN (United States). Graduate School of Genome Science and Technology
  3. Montana State Univ., Bozeman, MT (United States). Dept. of Microbiology and Immunology; Montana State Univ., Bozeman, MT (United States). Center for Biofilm Engineering
  4. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Physical Biosciences Division; Univ. of California, Berkeley, CA (United States). Dept. of Bioengineering
  6. Univ. of Tennessee, Knoxville, TN (United States). Graduate School of Genome Science and Technology; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Division
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The genome ofPelosinus fermentansJBW45, isolated from a chromium-contaminated site in Hanford, Washington, USA, has been completed with PacBio sequencing. Nine copies of the rRNA gene operon and multiple transposase genes with identical sequences resulted in breaks in the original draft genome and may suggest genomic instability of JBW45.

Research Organization:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-00OR22725; AC02-05CH11231
OSTI ID:
1265635
Alternate ID(s):
OSTI ID: 1619070
Journal Information:
Genome Announcements, Vol. 3, Issue 5; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (30)

Draft Genome Sequence of Pelosinus fermentans JBW45, Isolated during In Situ Stimulation for Cr(VI) Reduction journal September 2012
Divergent Aquifer Biogeochemical Systems Converge on Similar and Unexpected Cr(VI) Reduction Products journal August 2014
Impact of Biostimulated Redox Processes on Metal Dynamics in an Iron-Rich Creek Soil of a Former Uranium Mining Area journal January 2010
Effect of biostimulants on 2,4,6-trinitrotoluene (TNT) degradation and bacterial community composition in contaminated aquifer sediment enrichments journal July 2012
Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) Bioremediation in Groundwater: Are Known RDX-Degrading Bacteria the Dominant Players? journal July 2010
Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile journal January 2008
Novel Firmicutes Group Implicated in the Dechlorination of Two Chlorinated Xanthones, Analogues of Natural Organochlorines journal December 2013
Mechanism of uranium (VI) removal by two anaerobic bacterial communities journal December 2010
Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions journal May 2013
The Impact of Injections of Different Nutrients on the Bacterial Community and Its Dechlorination Activity in Chloroethene-Contaminated Groundwater journal January 2015
Microbial Community Succession during Lactate Amendment and Electron Acceptor Limitation Reveals a Predominance of Metal-Reducing Pelosinus spp. journal January 2012
Microbial reduction of uranium(VI) in sediments of different lithologies collected from Sellafield journal December 2014
Tetrachloromethane-Degrading Bacterial Enrichment Cultures and Isolates from a Contaminated Aquifer journal July 2015
Hexavalent Chromium Reduction under Fermentative Conditions with Lactate Stimulated Native Microbial Communities journal December 2013
Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site journal August 2013
A Limited Microbial Consortium Is Responsible for Extended Bioreduction of Uranium in a Contaminated Aquifer journal July 2011
Pelosinus defluvii sp. nov., isolated from chlorinated solvent-contaminated groundwater, emended description of the genus Pelosinus and transfer of Sporotalea propionica to Pelosinus propionicus comb. nov. journal August 2011
Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses journal January 2007
Genomic and Physiological Characterization of the Chromate-Reducing, Aquifer-Derived Firmicute Pelosinus sp. Strain HCF1 journal October 2012
Draft Genome Sequences for Two Metal-Reducing Pelosinus fermentans Strains Isolated from a Cr(VI)-Contaminated Site and for Type Strain R7 journal August 2012
Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology journal September 2014
Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia journal January 2014
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement journal November 2014
Bacterial Genome Instability journal March 2014
Repetitive DNA and next-generation sequencing: computational challenges and solutions journal November 2011
Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences journal June 2014
Intragenomic heterogeneity of the 16S rRNA gene in strain UFO1 caused by a 100-bp insertion in helix 6: Intragenomic heterogeneity in helix 6 of UFO1 16S rRNA gene journal March 2010
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development journal November 2014
rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivation. journal January 1995
rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria journal April 2000

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A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies journal July 2017

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