Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost

Brumm, Phillip; Land, Miriam L.; Mead, David

doi:10.1186/s40793-016-0153-y

Title: Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost

Journal Article · Wed Apr 27 00:00:00 EDT 2016 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-016-0153-y· OSTI ID:1261376

Brumm, Phillip ^[1]; Land, Miriam L. ^[2]; Mead, David ^[1]

Univ. of Wisconsin, Madison, WI (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

Geobacillus sp. WCH70 was one of several thermophilic organisms isolated from hot composts in the Middleton, WI area. Comparison of 16 S rRNA sequences showed the strain may be a new species, and is most closely related to G. galactosidasius and G. toebii. The genome was sequenced, assembled, and annotated by the DOE Joint Genome Institute and deposited at the NCBI in December 2009 (CP001638). The genome of Geobacillus species WCH70 consists of one circular chromosome of 3,893,306 bp with an average G + C content of 43 %, and two circular plasmids of 33,899 and 10,287 bp with an average G + C content of 40 %. Among sequenced organisms, Geobacillus sp. WCH70 shares highest Average Nucleotide Identity (86 %) with G. thermoglucosidasius strains, as well as similar genome organization. Geobacillus sp. WCH70 appears to be a highly adaptable organism, with an exceptionally high 125 annotated transposons in the genome. The organism also possesses four predicted restriction-modification systems not found in other Geobacillus species.

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Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1261376

Journal Information:: Standards in Genomic Sciences, Vol. 11, Issue 33; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 9 works

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59 BASIC BIOLOGICAL SCIENCES
Geobacillus sp. WCH70
Wood compost
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Transposons
Restriction-modification

Title: Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost

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