Phylogenetic Analysis of Aquaspirillum magnetotacticum Using Polymerase Chain Reaction-Amplified 16S rRNA-Specific DNA
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journal
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April 1991 |
Desulfovibrio profundus sp. nov., a Novel Barophilic Sulfate-Reducing Bacterium from Deep Sediment Layers in the Japan Sea
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April 1997 |
Microbial Communities of Deep Marine Subsurface Sediments: Molecular and Cultivation Surveys
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journal
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September 2006 |
Diverse Mn(II)-Oxidizing Bacteria Isolated from Submarine Basalts at Loihi Seamount
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journal
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April 2005 |
Comparison of denitrification by Pseudomonas stutzeri, Pseudomonas aeruginosa, and Paracoccus denitrificans.
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journal
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January 1983 |
Geomicrobiology of manganese(II) oxidation
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September 2005 |
Distributions of Microbial Activities in Deep Subseafloor Sediments
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journal
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December 2004 |
The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth
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journal
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May 2012 |
Isolation of Sulfate-Reducing Bacteria from Sediments Above the Deep-Subseafloor Aquifer
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journal
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January 2012 |
Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment
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journal
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March 2012 |
Predicting active site residue annotations in the Pfam database
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journal
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August 2007 |
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
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journal
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November 2014 |
IMG: the integrated microbial genomes database and comparative analysis system
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journal
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December 2011 |
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
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January 2009 |
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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journal
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May 2015 |
Culturing captures members of the soil rare biosphere: Rare biosphere of soil
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journal
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July 2012 |
Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents
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journal
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June 2009 |
Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt
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journal
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March 2013 |
Nitrogen cycling in the deep sedimentary biosphere: nitrate isotopes in porewaters underlying the oligotrophic North Atlantic
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journal
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January 2015 |
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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journal
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August 2014 |
Preservation of Organic Matter in Marine Sediments: Controls, Mechanisms, and an Imbalance in Sediment Organic Carbon Budgets?
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journal
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February 2007 |
Linking microbial heterotrophic activity and sediment lithology in oxic, oligotrophic sub-seafloor sediments of the North Atlantic Ocean
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journal
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January 2011 |
Enrichment and Cultivation of Microorganisms from Sediment from the Slope of the Peru Trench (ODP Site 1230)
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book
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June 2005 |
Prokka: rapid prokaryotic genome annotation
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journal
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March 2014 |
Paracoccus carotinifaciens sp. nov., a new aerobic Gram-negative astaxanthin-producing bacterium
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January 1999 |
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
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journal
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May 2012 |
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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November 2012 |
ARB: a software environment for sequence data
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journal
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February 2004 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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journal
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May 2012 |
Oxygen consumption rates in subseafloor basaltic crust derived from a reaction transport model
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journal
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September 2013 |
Shewanella profunda sp. nov., isolated from deep marine sediment of the Nankai Trough
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journal
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November 2004 |
Glutathione transferases in bacteria: Bacterial GSTs
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November 2008 |
Enzymes and associated electron transport systems that catalyse the respiratory reduction of nitrogen oxides and oxyanions
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journal
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December 1995 |
QIIME allows analysis of high-throughput community sequencing data
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journal
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April 2010 |
Tracer-Based Estimates of Drilling-Induced Microbial Contamination of Deep Sea Crust
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journal
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July 2000 |
Mercury Adaptation among Bacteria from a Deep-Sea Hydrothermal Vent
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journal
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January 2005 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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journal
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March 2004 |
Gene expression in the deep biosphere
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journal
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June 2013 |
Measurement of in Situ Activities of Nonphotosynthetic Microorganisms in Aquatic and Terrestrial Habitats
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journal
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October 1985 |
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
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journal
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April 2009 |
Selection and organisation of denitrifying electron-transfer pathways in Paracoccus denitrificans
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journal
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July 1983 |
Microorganisms persist at record depths in the subseafloor of the Canterbury Basin
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journal
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January 2014 |
Initiation of long-term coupled microbiological, geochemical, and hydrological experimentation within the seafloor at North Pond, western flank of the Mid-Atlantic Ridge
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book
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September 2011 |
Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica.
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journal
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July 2000 |
Jalview Version 2--a multiple sequence alignment editor and analysis workbench
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January 2009 |
Subseafloor sedimentary life in the South Pacific Gyre
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June 2009 |
The elusive roles of bacterial glutathione S- transferases: new lessons from genomes
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journal
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January 2002 |
A tentative direct microscopic method for counting living marine bacteria
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journal
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March 1979 |
VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data
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journal
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January 2015 |
Manganese(II)-Oxidizing Bacillus Spores in Guaymas Basin Hydrothermal Sediments and Plumes
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journal
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May 2006 |
Genomic Insights into Mn(II) Oxidation by the Marine Alphaproteobacterium Aurantimonas sp. Strain SI85-9A1
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journal
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March 2008 |
Members of the genus Arthrobacter grow anaerobically using nitrate ammonification and fermentative processes: anaerobic adaptation of aerobic bacteria abundant in soil
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journal
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June 2003 |
A new method for the detection and enumeration of manganese oxidizing and reducing microorganisms
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journal
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September 1973 |
Heat and fluid flux through sediment on the western flank of the Mid-Atlantic Ridge: A hydrogeological study of North Pond
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journal
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March 1992 |
Production of cryoprotectant extracellular polysaccharide substances (EPS) by the marine psychrophilic bacterium Colwellia psychrerythraea strain 34H under extreme conditionsThis article is one of a selection of papers in the Special Issue on Polar and Alpine Microbiology.
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journal
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January 2009 |
Isolation of a Methanogen from Deep Marine Sediments That Contain Methane Hydrates, and Description of Methanoculleus submarinus sp. nov
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journal
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June 2003 |
Preservation of Organic Matter in Marine Sediments: Controls, Mechanisms, and an Imbalance in Sediment Organic Carbon Budgets?
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journal
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May 2007 |
Analysis of immune, microbiota and metabolome maturation in infants in a clinical trial of Lactobacillus paracasei CBA L74-fermented formula
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journal
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June 2020 |
Why does the Aβ peptide of Alzheimer share structural similarity with antimicrobial peptides?
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journal
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March 2020 |
Draft Genome Sequence of Comamonas aquatilis Strain LK (= CSUR P6418 = CECT 9772), Isolated from the Planarian Schmidtea mediterranea
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journal
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February 2021 |
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
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text
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January 2021 |
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.
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text
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January 2014 |
Erratum: Microorganisms persist at record depths in the subseafloor of the Canterbury Basin
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journal
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October 2014 |
Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt
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text
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January 2013 |
Salinimonas marina sp. nov. Isolated from Jeju Island Marine Sediment
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journal
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June 2021 |
Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms
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journal
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December 2021 |
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi
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journal
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September 2020 |
Evidence for Direct Electron Transfer by a Gram-Positive Bacterium Isolated from a Microbial Fuel Cell
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journal
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September 2011 |
Widespread Distribution of Ability to Oxidize Manganese Among Freshwater Bacteria
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journal
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January 1982 |
Microbial Manganese Reduction by Enrichment Cultures from Coastal Marine Sediments
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journal
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January 1985 |
Dissimilatory nitrate reduction to nitrate, nitrous oxide, and ammonium by Pseudomonas putrefaciens.
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journal
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January 1985 |
Partial purification and characterization of manganese-oxidizing factors of Pseudomonas fluorescens GB-1.
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journal
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January 1997 |
Enumeration and Detection of Anaerobic Ferrous Iron-Oxidizing, Nitrate-Reducing Bacteria from Diverse European Sediments
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journal
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December 1998 |
cumA, a Gene Encoding a Multicopper Oxidase, Is Involved in Mn2+ Oxidation in Pseudomonas putida GB-1
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journal
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April 1999 |