High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass
Abstract
Leucobacter chironomi strain MM2LBT (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LBT was isolated from a chironomid (Diptera; Chironomidae) egg mass that was sampled from a waste stabilization pond in northern Israel. In a phylogenetic tree based on 16S rRNA gene sequences, strain MM2LBT formed a distinct branch within the radiation encompassing the genus Leucobacter. Here we describe the features of this organism, together with the complete genome sequence and annotation. We find that the DNA GC content is 69.90%. The chromosome length is 2,964,712 bp. It encodes 2,690 proteins and 61 RNA genes. L. chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.
- Authors:
-
- Univ. of Haifa (Israel)
- St. Petersburg Academic Univ. (Russia); St. Petersburg Academic Univ. (Russia)
- Dept. of Energy Joint Genome Inst., Walnut Creek, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Leibniz Institute DSMZ, Braunschweig (Germany)
- Dept. of Energy Joint Genome Inst., Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1256905
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Journal Article: Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Leucobacter chironomi; Microbacteriaceae; Chironomid; Chironomus; Egg mass; Hexavalent chromium
Citation Formats
Laviad, Sivan, Lapidus, Alla, Copeland, Alex, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N., Markowitz, Victor M., Pukall, Rüdiger, Klenk, Hans-Peter, Woyke, Tanja, Kyrpides, Nikos C., and Halpern, Malka. High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass. United States: N. p., 2015.
Web. doi:10.1186/s40793-015-0003-3.
Laviad, Sivan, Lapidus, Alla, Copeland, Alex, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N., Markowitz, Victor M., Pukall, Rüdiger, Klenk, Hans-Peter, Woyke, Tanja, Kyrpides, Nikos C., & Halpern, Malka. High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass. United States. https://doi.org/10.1186/s40793-015-0003-3
Laviad, Sivan, Lapidus, Alla, Copeland, Alex, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia N., Markowitz, Victor M., Pukall, Rüdiger, Klenk, Hans-Peter, Woyke, Tanja, Kyrpides, Nikos C., and Halpern, Malka. 2015.
"High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass". United States. https://doi.org/10.1186/s40793-015-0003-3. https://www.osti.gov/servlets/purl/1256905.
@article{osti_1256905,
title = {High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass},
author = {Laviad, Sivan and Lapidus, Alla and Copeland, Alex and Reddy, T. B. K. and Huntemann, Marcel and Pati, Amrita and Ivanova, Natalia N. and Markowitz, Victor M. and Pukall, Rüdiger and Klenk, Hans-Peter and Woyke, Tanja and Kyrpides, Nikos C. and Halpern, Malka},
abstractNote = {Leucobacter chironomi strain MM2LBT (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironomi belongs to the family Microbacteriaceae, a family within the class Actinobacteria. Strain MM2LBT was isolated from a chironomid (Diptera; Chironomidae) egg mass that was sampled from a waste stabilization pond in northern Israel. In a phylogenetic tree based on 16S rRNA gene sequences, strain MM2LBT formed a distinct branch within the radiation encompassing the genus Leucobacter. Here we describe the features of this organism, together with the complete genome sequence and annotation. We find that the DNA GC content is 69.90%. The chromosome length is 2,964,712 bp. It encodes 2,690 proteins and 61 RNA genes. L. chironomi genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project.},
doi = {10.1186/s40793-015-0003-3},
url = {https://www.osti.gov/biblio/1256905},
journal = {Standards in Genomic Sciences},
issn = {1944-3277},
number = 1,
volume = 10,
place = {United States},
year = {Fri May 08 00:00:00 EDT 2015},
month = {Fri May 08 00:00:00 EDT 2015}
}
Web of Science
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Leucobacter iarius sp. nov., in the family Microbacteriaceae
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Chironomid egg masses harbour the clinical species Aeromonas taiwanensis and Aeromonas sanarellii
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Leucobacter exalbidus sp. nov., an actinobacterium isolated from a mixed culture from compost
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Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8T
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- Standards in Genomic Sciences, Vol. 9, Issue 3
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