Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

López García de Lomana, Adrián; Schäuble, Sascha; Valenzuela, Jacob; Imam, Saheed; Carter, Warren; Bilgin, Damla D.; Yohn, Christopher B.; Turkarslan, Serdar; Reiss, David J.; Orellana, Mónica V.; Price, Nathan D.; Baliga, Nitin S.

doi:10.1186/s13068-015-0391-z

Title: Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

Journal Article · Wed Dec 02 00:00:00 EST 2015 · Biotechnology for Biofuels

DOI:https://doi.org/10.1186/s13068-015-0391-z· OSTI ID:1618627

López García de Lomana, Adrián; Schäuble, Sascha; Valenzuela, Jacob; Imam, Saheed; Carter, Warren; Bilgin, Damla D.; Yohn, Christopher B.; Turkarslan, Serdar; Reiss, David J.; Orellana, Mónica V.; Price, Nathan D.; Baliga, Nitin S.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: National Institutes of Health (NIH); German Ministry for Research and Education; USDOE Office of Science (SC)

Grant/Contract Number:: DEEE0006315; P50 GM076547; GerontoSys FKZ 0315581D; e:Med FKZ 01ZX1402C; EE0006315; AC02-05CH11231; FKZ 0315581D; FKZ 01ZX1402C

OSTI ID:: 1618627

Alternate ID(s):: OSTI ID: 1256492; OSTI ID: 1378685

Journal Information:: Biotechnology for Biofuels, Journal Name: Biotechnology for Biofuels Vol. 8 Journal Issue: 1; ISSN 1754-6834

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: Netherlands

Language:: English

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Cited by: 48 works

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Lipid accumulation and biosynthesis genes response of the oleaginous Chlorella pyrenoidosa under three nutrition stressors Fan, Jianhua; Cui, Yanbin; Wan, Minxi Biotechnology for Biofuels, Vol. 7, Issue 1 https://doi.org/10.1186/1754-6834-7-17	journal	January 2014
Metabolic costs of amino acid and protein production in Escherichia coli Kaleta, Christoph; Schäuble, Sascha; Rinas, Ursula Biotechnology Journal, Vol. 8, Issue 9 https://doi.org/10.1002/biot.201200267	journal	July 2013
Algal Lipid Bodies: Stress Induction, Purification, and Biochemical Characterization in Wild-Type and Starchless Chlamydomonas reinhardtii Wang, Zi Teng; Ullrich, Nico; Joo, Sunjoo Eukaryotic Cell, Vol. 8, Issue 12 https://doi.org/10.1128/EC.00272-09	journal	October 2009
STRING 8--a global view on proteins and their functional interactions in 630 organisms Jensen, L. J.; Kuhn, M.; Stark, M. Nucleic Acids Research, Vol. 37, Issue Database https://doi.org/10.1093/nar/gkn760	journal	January 2009
The Regulation of Photosynthetic Structure and Function during Nitrogen Deprivation in Chlamydomonas reinhardtii Juergens, Matthew T.; Deshpande, Rahul R.; Lucker, Ben F. Plant Physiology, Vol. 167, Issue 2 https://doi.org/10.1104/pp.114.250530	journal	December 2014
The Immunological Functions of Saposins Darmoise, Alexandre; Maschmeyer, Patrick; Winau, Florian Advances in Immunology https://doi.org/10.1016/S0065-2776(10)05002-9	book	January 2010
What is flux balance analysis? Orth, Jeffrey D.; Thiele, Ines; Palsson, Bernhard Ø Nature Biotechnology, Vol. 28, Issue 3 https://doi.org/10.1038/nbt.1614	journal	March 2010
Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation Vischi Winck, Flavia; Arvidsson, Samuel; Riaño-Pachón, Diego Mauricio PLoS ONE, Vol. 8, Issue 11 https://doi.org/10.1371/journal.pone.0079909	journal	November 2013

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Time-resolved multi-omics analysis reveals the role of nutrient stress-induced resource reallocation for TAG accumulation in oleaginous fungus Mortierella alpina Lu, Hengqian; Chen, Haiqin; Tang, Xin Biotechnology for Biofuels, Vol. 13, Issue 1 https://doi.org/10.1186/s13068-020-01757-1	journal	July 2020
RNA-Seq and transcriptome analysis of nitrogen-deprivation responsive genes in Dunaliella salina TG strain Lv, Hexin; Wang, Qiao-e; Qi, Bingbing Theoretical and Experimental Plant Physiology, Vol. 31, Issue 1 https://doi.org/10.1007/s40626-019-00138-w	journal	January 2019
Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita Yamazaki, Tomokazu; Ichihara, Kensuke; Suzuki, Ryogo Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-11677-0	journal	September 2017
MAPK/ERK and JNK pathways regulate lipid synthesis and cell growth of Chlamydomonas reinhardtii under osmotic stress, respectively Yang, Ahreum; Suh, William I.; Kang, Nam Kyu Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-32216-5	journal	September 2018
Temporal and metabolic overlap between lipid accumulation and programmed cell death due to nitrogen starvation in the unicellular chlorophyte Chlamydomonas reinhardtii Sathe, Santosh; Orellana, Mónica V.; Baliga, Nitin S. Phycological Research, Vol. 67, Issue 3 https://doi.org/10.1111/pre.12368	journal	March 2019
Multiomics analysis reveals a distinct mechanism of oleaginousness in the emerging model alga Chromochloris zofingiensis Liu, Jin; Sun, Zheng; Mao, Xuemei The Plant Journal https://doi.org/10.1111/tpj.14302	journal	April 2019
Effect of ammonium and high light intensity on the accumulation of lipids in Nannochloropsis oceanica (CCAP 849/10) and Phaeodactylum tricornutum (CCAP 1055/1) Huete-Ortega, María; Okurowska, Katarzyna; Kapoore, Rahul Vijay Biotechnology for Biofuels, Vol. 11, Issue 1 https://doi.org/10.1186/s13068-018-1061-8	journal	March 2018
Characterization of type I and type II diacylglycerol acyltransferases from the emerging model alga Chlorella zofingiensis reveals their functional complementarity and engineering potential Mao, Xuemei; Wu, Tao; Kou, Yaping Biotechnology for Biofuels, Vol. 12, Issue 1 https://doi.org/10.1186/s13068-019-1366-2	journal	February 2019

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
network modeling
phenotypic transition
transcriptional regulatory network
metabolic network
lipid accumulation
Chlamydomonas reinhardtii

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii Lopez Garcia de Lomana, Adrian; Schauble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455 The current record is supplemented by this dataset	dataset	December 2015
Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii [Supplementary Data] García de Lomana, Adrián López; Schäuble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455.v1 The current record is supplemented by this dataset	dataset	December 2015
MOESM4 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii García de Lomana, Adrián López; Schäuble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d1 The current record is supplemented by this figure	figure	December 2015
MOESM4 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii Garcia de Lomana, Adrian Lopez; Schauble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d1.v1 The current record is supplemented by this dataset	dataset	December 2015
MOESM6 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii García de Lomana, Adrián López; Schäuble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d2.v1 The current record is supplemented by this dataset	dataset	December 2015
MOESM2 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii López García de Lomana, Adrián; Schäuble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d3.v1 The current record is supplemented by this dataset	dataset	December 2015
MOESM1 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii López García de Lomana, Adrián; Schäuble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d4.v1 The current record is supplemented by this dataset	dataset	December 2015
MOESM5 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii Garcia de Lomana, Adrian Lopez; Schauble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d5 The current record is supplemented by this dataset	dataset	December 2015
MOESM5 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii López García de Lomana, Adrián; Schäuble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d5.v1 The current record is supplemented by this dataset	dataset	December 2015
MOESM3 of Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii López García de Lomana, Adrián; Schäuble, Sascha; Valenzuela, Jacob https://doi.org/10.6084/m9.figshare.c.3633455_d6.v1 The current record is supplemented by this dataset	dataset	February 2015