High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

De Meyer, Sofie E.; Fabiano, Elena; Tian, Rui; Van Berkum, Peter; Seshadri, Rekha; Reddy, T. B. K.; Markowitz, Victor; Ivanova, Natalia N.; Pati, Amrita; Woyke, Tanja; Howieson, John; Kyrpides, Nikos C.; Reeve, Wayne

doi:10.1186/1944-3277-10-13

Title: High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

Journal Article · Sat Apr 11 00:00:00 EDT 2015 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/1944-3277-10-13· OSTI ID:1256478

De Meyer, Sofie E. ^[1]; Fabiano, Elena ^[2]; Tian, Rui ^[1]; Van Berkum, Peter ^[3]; Seshadri, Rekha ^[4]; Reddy, T. B. K. ^[4]; Markowitz, Victor ^[5]; Ivanova, Natalia N. ^[4]; Pati, Amrita ^[4]; Woyke, Tanja ^[4]; Howieson, John ^[1]; Kyrpides, Nikos C. ^[6]; Reeve, Wayne ^[1]

Murdoch Univ., Murdoch (Western Australia)
Instituto de Investigaciones Biologicas Clemente Estable, Montevideo (Uruguay)
Soybean Genomics and Improvement Lab., Beltsville, MD (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia)

Cupriavidus sp. strain UYPR2.512 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida grown in soils from a native forest of Uruguay. Here we describe the features of Cupriavidus sp. strain UYPR2.512, together with sequence and annotation. We find the 7,858,949 bp high-quality permanent draft genome is arranged in 365 scaffolds of 369 contigs, contains 7,411 protein-coding genes and 76 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; AC52-07NA27344; AC02-06NA25396

OSTI ID:: 1256478

Journal Information:: Standards in Genomic Sciences, Vol. 10, Issue 1; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 5 works

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Title: High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512

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