Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

Wegrzyn, Jill L.; Eckert, Andrew J.; Choi, Minyoung; Lee, Jennifer M.; Stanton, Brian J.; Sykes, Robert; Davis, Mark F.; Tsai, Chung-Jui; Neale, David B.

doi:10.1111/j.1469-8137.2010.03415.x

Title: Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

Journal Article · Fri Sep 10 00:00:00 EDT 2010 · New Phytologist

DOI:https://doi.org/10.1111/j.1469-8137.2010.03415.x· OSTI ID:1254104

Wegrzyn, Jill L.; Eckert, Andrew J.; Choi, Minyoung; Lee, Jennifer M.; Stanton, Brian J.; Sykes, Robert; Davis, Mark F.; Tsai, Chung-Jui; Neale, David B.

Cite

Export

Save

Research Organization:: National Renewable Energy Laboratory (NREL), Golden, CO (United States)

Sponsoring Organization:: USDOE

DOE Contract Number:: AC36-08GO28308

OSTI ID:: 1254104

Report Number(s):: NREL/JA-510-49829

Journal Information:: New Phytologist, Vol. 188, Issue 2; ISSN 0028-646X

Publisher:: Wiley

Country of Publication:: United States

Language:: English

References (86)

Association genetics of complex traits in conifers Neale, David B.; Savolainen, Outi Trends in Plant Science, Vol. 9, Issue 7 https://doi.org/10.1016/j.tplants.2004.05.006	journal	July 2004
Lignin Biosynthesis Boerjan, Wout; Ralph, John; Baucher, Marie Annual Review of Plant Biology, Vol. 54, Issue 1, p. 519-546 https://doi.org/10.1146/annurev.arplant.54.031902.134938	journal	June 2003
Repression of lignin biosynthesis promotes cellulose accumulation and growth in transgenic trees Hu, Wen-Jing; Harding, Scott A.; Lung, Jrhau Nature Biotechnology, Vol. 17, Issue 8, p. 808-812 https://doi.org/10.1038/11758	journal	August 1999
hierfstat, a package for r to compute and test hierarchical F-statistics Goudet, Jerome Molecular Ecology Notes, Vol. 5, Issue 1 https://doi.org/10.1111/j.1471-8286.2004.00828.x	journal	March 2005
Will genomics guide a greener forest biotech? Groover, A. Trends in Plant Science, Vol. 12, Issue 6 https://doi.org/10.1016/j.tplants.2007.04.005	journal	June 2007
Patterns of DNA sequence variation at candidate gene loci in black poplar (Populus nigra L.) as revealed by single nucleotide polymorphisms Chu, Yanguang; Su, Xiaohua; Huang, Qinjun Genetica, Vol. 137, Issue 2 https://doi.org/10.1007/s10709-009-9371-1	journal	May 2009
Essential Role of Caffeoyl Coenzyme A O -Methyltransferase in Lignin Biosynthesis in Woody Poplar Plants Zhong, Ruiqin; Morrison, W. Herbert; Himmelsbach, David S. Plant Physiology, Vol. 124, Issue 2 https://doi.org/10.1104/pp.124.2.563	journal	October 2000
Evolutionary and ecological functional genomics Feder, Martin E.; Mitchell-Olds, Thomas Nature Reviews Genetics, Vol. 4, Issue 8 https://doi.org/10.1038/nrg1128	journal	August 2003
Genomics of cellulose biosynthesis in poplars: Research review Joshi, Chandrashekhar P.; Bhandari, Suchita; Ranjan, Priya New Phytologist, Vol. 164, Issue 1 https://doi.org/10.1111/j.1469-8137.2004.01155.x	journal	August 2004
A general approach to single-nucleotide polymorphism discovery Marth, Gabor T.; Korf, Ian; Yandell, Mark D. Nature Genetics, Vol. 23, Issue 4 https://doi.org/10.1038/70570	journal	December 1999
Structural and Catalytic Properties of the Four Phenylalanine Ammonia-Lyase Isoenzymes from Parsley (Petroselinum Crispum Nym.) Appert, Christoph; Logemann, Elke; Hahlbrock, Klaus European Journal of Biochemistry, Vol. 225, Issue 1 https://doi.org/10.1111/j.1432-1033.1994.00491.x	journal	October 1994
Association genetics in Pinus taeda L. II. Carbon isotope discrimination González-Martínez, S. C.; Huber, D.; Ersoz, E. Heredity, Vol. 101, Issue 1 https://doi.org/10.1038/hdy.2008.21	journal	May 2008
A direct approach to false discovery rates Storey, John D. Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 64, Issue 3 https://doi.org/10.1111/1467-9868.00346	journal	August 2002
Combinatorial modification of multiple lignin traits in trees through multigene cotransformation Li, L.; Zhou, Y.; Cheng, X. Proceedings of the National Academy of Sciences, Vol. 100, Issue 8, p. 4939-4944 https://doi.org/10.1073/pnas.0831166100	journal	March 2003
Red Xylem and Higher Lignin Extractability by Down-Regulating a Cinnamyl Alcohol Dehydrogenase in Poplar Baucher, M.; Chabbert, B.; Pilate, G. Plant Physiology, Vol. 112, Issue 4 https://doi.org/10.1104/pp.112.4.1479	journal	December 1996
Sucrose synthase affects carbon partitioning to increase cellulose production and altered cell wall ultrastructure Coleman, H. D.; Yan, J.; Mansfield, S. D. Proceedings of the National Academy of Sciences, Vol. 106, Issue 31 https://doi.org/10.1073/pnas.0900188106	journal	July 2009
A novel lignin in poplar trees with a reduced caffeic acid/5-hydroxyferulic acid O-methyltransferase activity: A novel lignin in poplar trees Doorsselaere, Jan; Baucher, Marie; Chognot, Emmanuelle The Plant Journal, Vol. 8, Issue 6 https://doi.org/10.1046/j.1365-313X.1995.8060855.x	journal	December 1995
Association Genetics in Pinus taeda L. I. Wood Property Traits González-Martínez, Santiago C.; Wheeler, Nicholas C.; Ersoz, Elhan Genetics, Vol. 175, Issue 1 https://doi.org/10.1534/genetics.106.061127	journal	November 2006
Molecular basis for the evolution of xylem lignification Peter, Gary; Neale, David Current Opinion in Plant Biology, Vol. 7, Issue 6 https://doi.org/10.1016/j.pbi.2004.09.002	journal	December 2004
Exploring lignification in conifers by silencing hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase in Pinus radiata Wagner, A.; Ralph, J.; Akiyama, T. Proceedings of the National Academy of Sciences, Vol. 104, Issue 28 https://doi.org/10.1073/pnas.0701428104	journal	July 2007
Coniferyl aldehyde 5-hydroxylation and methylation direct syringyl lignin biosynthesis in angiosperms Osakabe, K.; Tsao, C. C.; Li, L. Proceedings of the National Academy of Sciences, Vol. 96, Issue 16 https://doi.org/10.1073/pnas.96.16.8955	journal	August 1999
Differential Expression of Two Distinct Phenylalanine Ammonia-Lyase Genes in Condensed Tannin-Accumulating and Lignifying Cells of Quaking Aspen Kao, Yu-Ying; Harding, Scott A.; Tsai, Chung-Jui Plant Physiology, Vol. 130, Issue 2 https://doi.org/10.1104/pp.006262	journal	October 2002
Substrate preferences of O-methyltransferases in alfalfa suggest new pathways for 3-O-methylation of monolignols Parvathi, Kota; Chen, Fang; Guo, Dianjing The Plant Journal, Vol. 25, Issue 2 https://doi.org/10.1046/j.1365-313x.2001.00956.x	journal	January 2001
Recent Advances in Understanding Lignin Biosynthesis Whetten, Ross W.; MacKay, John J.; Sederoff, Ronald R. Annual Review of Plant Physiology and Plant Molecular Biology, Vol. 49, Issue 1 https://doi.org/10.1146/annurev.arplant.49.1.585	journal	June 1998
Distinct Roles of Cinnamate 4-hydroxylase Genes in Populus Lu, Shanfa; Zhou, Yihua; Li, Laigeng Plant and Cell Physiology, Vol. 47, Issue 7 https://doi.org/10.1093/pcp/pcj063	journal	July 2006
Biochemical characterization, molecular cloning and expression of laccases - a divergent gene family - in poplar Ranocha, Philippe; McDougall, Gordon; Hawkins, Simon European Journal of Biochemistry, Vol. 259, Issue 1-2 https://doi.org/10.1046/j.1432-1327.1999.00061.x	journal	January 1999
New hope for old dreams: evidence that plant cellulose synthase genes have finally been identified. Haigler, C. H.; Blanton, R. L. Proceedings of the National Academy of Sciences, Vol. 93, Issue 22 https://doi.org/10.1073/pnas.93.22.12082	journal	October 1996
Structure and tissue-specific expression of genes for phenylalanine ammonia-lyase from a hybrid aspen, Populus kitakamiensis Osakabe, Yuriko; Ohtsubo, Yuji; Kawai, Shinya Plant Science, Vol. 105, Issue 2 https://doi.org/10.1016/0168-9452(94)04042-7	journal	February 1995
DNA Sequence Variation and Selection of Tag Single-Nucleotide Polymorphisms at Candidate Genes for Drought-Stress Response in Pinus taeda L. González-Martínez, Santiago C.; Ersoz, Elhan; Brown, Garth R. Genetics, Vol. 172, Issue 3 https://doi.org/10.1534/genetics.105.047126	journal	December 2005
Purification, Cloning, and Properties of an Acyltransferase Controlling Shikimate and Quinate Ester Intermediates in Phenylpropanoid Metabolism Hoffmann, Laurent; Maury, Stéphane; Martz, Françoise Journal of Biological Chemistry, Vol. 278, Issue 1 https://doi.org/10.1074/jbc.M209362200	journal	October 2002
A Populus EST resource for plant functional genomics Sterky, F.; Bhalerao, R. R.; Unneberg, P. Proceedings of the National Academy of Sciences, Vol. 101, Issue 38 https://doi.org/10.1073/pnas.0401641101	journal	September 2004
The Path Forward for Biofuels and Biomaterials Ragauskas, Arthur J.; Williams, Charlotte K.; Davison, Brian H. Science, Vol. 311, Issue 5760, p. 484-489 https://doi.org/10.1126/science.1114736	journal	January 2006
Gene discovery in the wood-forming tissues of poplar: Analysis of 5,692 expressed sequence tags Sterky, F.; Regan, S.; Karlsson, J. Proceedings of the National Academy of Sciences, Vol. 95, Issue 22 https://doi.org/10.1073/pnas.95.22.13330	journal	October 1998
An update on the nomenclature for the cellulose synthase genes in Populus Kumar, Manoj; Thammannagowda, Shivegowda; Bulone, Vincent Trends in Plant Science, Vol. 14, Issue 5 https://doi.org/10.1016/j.tplants.2009.02.004	journal	May 2009
Principal components analysis corrects for stratification in genome-wide association studies Price, Alkes L.; Patterson, Nick J.; Plenge, Robert M. Nature Genetics, Vol. 38, Issue 8 https://doi.org/10.1038/ng1847	journal	July 2006
Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds Andersen, Jeppe; Zein, Imad; Wenzel, Gerhard BMC Plant Biology, Vol. 8, Issue 1 https://doi.org/10.1186/1471-2229-8-2	journal	January 2008
Towards zero emission pulp and paper production: the BioRegional MiniMill Harris, A. T.; Riddlestone, S.; Bell, Z. Journal of Cleaner Production, Vol. 16, Issue 18 https://doi.org/10.1016/j.jclepro.2008.02.005	journal	December 2008
Highly Parallel SNP Genotyping Fan, J. -B.; Oliphant, A.; Shen, R. Cold Spring Harbor Symposia on Quantitative Biology, Vol. 68, Issue 0 https://doi.org/10.1101/sqb.2003.68.69	journal	January 2003
The Cellulose Synthase Gene Superfamily and Biochemical Functions of Xylem-Specific Cellulose Synthase-Like Genes in Populus trichocarpa Suzuki, Shiro; Li, Laigeng; Sun, Ying-Hsuan Plant Physiology, Vol. 142, Issue 3 https://doi.org/10.1104/pp.106.086678	journal	September 2006
Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus Tsai, Chung-Jui; Harding, Scott A.; Tschaplinski, Timothy J. New Phytologist, Vol. 172, Issue 1 https://doi.org/10.1111/j.1469-8137.2006.01798.x	journal	October 2006
ProbCons: Probabilistic consistency-based multiple sequence alignment Do, C. B. Genome Research, Vol. 15, Issue 2, p. 330-340 https://doi.org/10.1101/gr.2821705	journal	January 2005
Silencing of Hydroxycinnamoyl-Coenzyme A Shikimate/Quinate Hydroxycinnamoyltransferase Affects Phenylpropanoid Biosynthesis Hoffmann, Laurent; Besseau, Sébastien; Geoffroy, Pierrette The Plant Cell, Vol. 16, Issue 6 https://doi.org/10.1105/tpc.020297	journal	May 2004
Laccase Down-Regulation Causes Alterations in Phenolic Metabolism and Cell Wall Structure in Poplar Ranocha, Philippe; Chabannes, Matthieu; Chamayou, Simon Plant Physiology, Vol. 129, Issue 1 https://doi.org/10.1104/pp.010988	journal	April 2002
Association Genetics of Coastal Douglas Fir ( Pseudotsuga menziesii var. menziesii , Pinaceae). I. Cold-Hardiness Related Traits Eckert, Andrew J.; Bower, Andrew D.; Wegrzyn, Jill L. Genetics, Vol. 182, Issue 4 https://doi.org/10.1534/genetics.109.102350	journal	June 2009
Down-regulation of an anionic peroxidase in transgenic aspen and its effect on lignin characteristics Li, Yahong; Kajita, Shinya; Kawai, Shinya Journal of Plant Research, Vol. 116, Issue 3 https://doi.org/10.1007/s10265-003-0087-5	journal	June 2003
Differential Expansion and Expression of α - and β -Tubulin Gene Families in Populus Oakley, Rodney V.; Wang, Yuh-Shuh; Ramakrishna, Wusirika Plant Physiology, Vol. 145, Issue 3 https://doi.org/10.1104/pp.107.107086	journal	September 2007
Biosynthesis of cellulose-enriched tension wood in Populus : global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis Andersson-Gunnerås, Sara; Mellerowicz, Ewa J.; Love, Jonathan The Plant Journal, Vol. 45, Issue 2 https://doi.org/10.1111/j.1365-313X.2005.02584.x	journal	January 2006
Cloning and characterization of two maize cDNAs encoding Cinnamoyl-CoA Reductase (CCR) and differential expression of the corresponding genes Pichon, Magalie; Courbou, Isabelle; Beckert, Michel Plant Molecular Biology https://doi.org/10.1023/A:1006060101866	journal	November 1998
Wood Formation in Trees Plomion, Christophe; Leprovost, Grégoire; Stokes, Alexia Plant Physiology, Vol. 127, Issue 4 https://doi.org/10.1104/pp.010816	journal	December 2001
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) Tuskan, G. A.; DiFazio, S.; Jansson, S. Science, Vol. 313, Issue 5793, p. 1596-1604 https://doi.org/10.1126/science.1128691	journal	September 2006
The Arabidopsis phenylalanine ammonia lyase gene family: kinetic characterization of the four PAL isoforms Cochrane, Fiona C.; Davin, Laurence B.; Lewis, Norman G. Phytochemistry, Vol. 65, Issue 11 https://doi.org/10.1016/j.phytochem.2004.05.006	journal	June 2004
Nucleotide Polymorphism and Linkage Disequilibrium Within and Among Natural Populations of European Aspen ( Populus tremula L., Salicaceae) Ingvarsson, Pär K. Genetics, Vol. 169, Issue 2 https://doi.org/10.1534/genetics.104.034959	journal	October 2004
TASSEL: software for association mapping of complex traits in diverse samples Bradbury, P. J.; Zhang, Z.; Kroon, D. E. Bioinformatics, Vol. 23, Issue 19 https://doi.org/10.1093/bioinformatics/btm308	journal	June 2007
Polymorphisms in Cinnamoyl CoA Reductase ( CCR ) Are Associated With Variation in Microfibril Angle in Eucalyptus spp. Thumma, Bala R.; Nolan, Maureen F.; Evans, Robert Genetics, Vol. 171, Issue 3 https://doi.org/10.1534/genetics.105.042028	journal	August 2005
Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits Stinchcombe, J. R.; Hoekstra, H. E. Heredity, Vol. 100, Issue 2 https://doi.org/10.1038/sj.hdy.6800937	journal	February 2007
Lignin: Genetic Engineering and Impact on Pulping Baucher, Marie; Halpin, Claire; Petit-Conil, Michel Critical Reviews in Biochemistry and Molecular Biology, Vol. 38, Issue 4, p. 305-350 https://doi.org/10.1080/10409230391036757	journal	January 2003
Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce Pavy, Nathalie; Pelgas, Betty; Beauseigle, Stéphanie BMC Genomics, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2164-9-21	journal	January 2008
Score Tests for Association between Traits and Haplotypes when Linkage Phase Is Ambiguous Schaid, Daniel J.; Rowland, Charles M.; Tines, David E. The American Journal of Human Genetics, Vol. 70, Issue 2 https://doi.org/10.1086/338688	journal	February 2002
Downregulation of Cinnamoyl-Coenzyme A Reductase in Poplar: Multiple-Level Phenotyping Reveals Effects on Cell Wall Polymer Metabolism and Structure Leplé, Jean-Charles; Dauwe, Rebecca; Morreel, Kris The Plant Cell, Vol. 19, Issue 11 https://doi.org/10.1105/tpc.107.054148	journal	November 2007
Genomics of cellulosic biofuels Rubin, Edward M. Nature, Vol. 454, Issue 7206 https://doi.org/10.1038/nature07190	journal	August 2008
Poplar genomics comes of age: Commentary Strauss, Steven H.; Martin, Francis M. New Phytologist, Vol. 164, Issue 1 https://doi.org/10.1111/j.1469-8137.2004.01179.x	journal	September 2004
Nucleotide Polymorphism and Phenotypic Associations Within and Around the phytochrome B2 Locus in European Aspen ( Populus tremula , Salicaceae) Ingvarsson, Pär K.; Garcia, M. Victoria; Luquez, Virginia Genetics, Vol. 178, Issue 4 https://doi.org/10.1534/genetics.107.082354	journal	February 2008
Structure of linkage disequilibrium and phenotypic associations in the maize genome Remington, D. L.; Thornsberry, J. M.; Matsuoka, Y. Proceedings of the National Academy of Sciences, Vol. 98, Issue 20 https://doi.org/10.1073/pnas.201394398	journal	September 2001
A sequence mutation in the cinnamyl alcohol dehydrogenase gene associated with altered lignification in loblolly pine: Sequence mutation associated with altered lignification in loblolly pine Gill, Geoffrey P.; Brown, Garth R.; Neale, David B. Plant Biotechnology Journal, Vol. 1, Issue 4 https://doi.org/10.1046/j.1467-7652.2003.00024.x	journal	July 2003
PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing Nickerson, D. Nucleic Acids Research, Vol. 25, Issue 14 https://doi.org/10.1093/nar/25.14.2745	journal	July 1997
Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom Xu, Zhanyou; Zhang, Dandan; Hu, Jun BMC Bioinformatics, Vol. 10, Issue Suppl 11 https://doi.org/10.1186/1471-2105-10-S11-S3	journal	January 2009
Effects of Coumarate 3-Hydroxylase Down-regulation on Lignin Structure Ralph, John; Akiyama, Takuya; Kim, Hoon Journal of Biological Chemistry, Vol. 281, Issue 13, p. 8843-8853 https://doi.org/10.1074/jbc.M511598200	journal	January 2006
Poplar Carbohydrate-Active Enzymes. Gene Identification and Expression Analyses Geisler-Lee, Jane; Geisler, Matt; Coutinho, Pedro M. Plant Physiology, Vol. 140, Issue 3 https://doi.org/10.1104/pp.105.072652	journal	January 2006
Differential tissue/organ-dependent expression of two sucrose- and cold-responsive genes for UDP-glucose pyrophosphorylase in Populus Meng, Meng; Geisler, Matt; Johansson, Henrik Gene, Vol. 389, Issue 2 https://doi.org/10.1016/j.gene.2006.11.006	journal	March 2007
Genomics of hybrid poplar (Populus trichocarpa× deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences: INSECT-INDUCED DEFENCES IN POPLAR Ralph, Steven; Oddy, Claire; Cooper, Dawn Molecular Ecology, Vol. 15, Issue 5 https://doi.org/10.1111/j.1365-294X.2006.02824.x	journal	April 2006
Field and pulping performances of transgenic trees with altered lignification Pilate, Gilles; Guiney, Emma; Holt, Karen Nature Biotechnology, Vol. 20, Issue 6 https://doi.org/10.1038/nbt0602-607	journal	June 2002
Multilocus Patterns of Nucleotide Diversity and Divergence Reveal Positive Selection at Candidate Genes Related to Cold Hardiness in Coastal Douglas Fir ( Pseudotsuga menziesii var. menziesii ) Eckert, Andrew J.; Wegrzyn, Jill L.; Pande, Barnaly Genetics, Vol. 183, Issue 1 https://doi.org/10.1534/genetics.109.103895	journal	July 2009
The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes Djerbi, Soraya; Lindskog, Mats; Arvestad, Lars Planta, Vol. 221, Issue 5 https://doi.org/10.1007/s00425-005-1498-4	journal	June 2005
Suppression of O -Methyltransferase Gene by Homologous Sense Transgene in Quaking Aspen Causes Red-Brown Wood Phenotypes Tsai, Chung-Jui; Popko, Jacqueline L.; Mielke, Melissa R. Plant Physiology, Vol. 117, Issue 1 https://doi.org/10.1104/pp.117.1.101	journal	May 1998
The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression Barakat, Abdelali; Bagniewska-Zadworna, Agnieszka; Choi, Alex BMC Plant Biology, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2229-9-26	journal	January 2009
Population Structure and Eigenanalysis Patterson, Nick; Price, Alkes L.; Reich, David PLoS Genetics, Vol. 2, Issue 12 https://doi.org/10.1371/journal.pgen.0020190	journal	January 2006
Biotechnology and the domestication of forest trees Boerjan, Wout Current Opinion in Biotechnology, Vol. 16, Issue 2 https://doi.org/10.1016/j.copbio.2005.03.003	journal	April 2005
Lignin Impact on Fiber Degradation: Increased Enzymatic Digestibility of Genetically Engineered Tobacco ( Nicotiana tabacum ) Stems Reduced in Lignin Content Sewalt, Vincent J. H.; Ni, Weiting; Jung, Hans G. Journal of Agricultural and Food Chemistry, Vol. 45, Issue 5 https://doi.org/10.1021/jf9609690	journal	May 1997
Biosynthesis of monolignols. Genomic and reverse genetic approaches Dixon, Richard A.; Srinivasa Reddy, M. S. Phytochemistry Reviews, Vol. 2, Issue 3 https://doi.org/10.1023/B:PHYT.0000045486.50637.37	journal	January 2003
SNP discovery using advanced algorithms and neural networks Unneberg, P.; Stromberg, M.; Sterky, F. Bioinformatics, Vol. 21, Issue 10 https://doi.org/10.1093/bioinformatics/bti354	journal	March 2005
Emerging Model Systems in Plant Biology: Poplar (Populus) as A Model Forest Tree Bradshaw, H. D.; Ceulemans, Reinhart; Davis, John Journal of Plant Growth Regulation, Vol. 19, Issue 3 https://doi.org/10.1007/s003440000030	journal	September 2000
A High-Resolution Transcript Profile across the Wood-Forming Meristem of Poplar Identifies Potential Regulators of Cambial Stem Cell Identity Schrader, Jarmo; Nilsson, Jeanette; Mellerowicz, Ewa The Plant Cell, Vol. 16, Issue 9 https://doi.org/10.1105/tpc.104.024190	journal	August 2004
PineSAP--sequence alignment and SNP identification pipeline Wegrzyn, J. L.; Lee, J. M.; Liechty, J. Bioinformatics, Vol. 25, Issue 19 https://doi.org/10.1093/bioinformatics/btp477	journal	August 2009
Statistical significance for genomewide studies Storey, J. D.; Tibshirani, R. Proceedings of the National Academy of Sciences, Vol. 100, Issue 16, p. 9440-9445 https://doi.org/10.1073/pnas.1530509100	journal	July 2003
Differential Substrate Inhibition Couples Kinetically Distinct 4-Coumarate:Coenzyme A Ligases with Spatially Distinct Metabolic Roles in Quaking Aspen Harding, Scott A.; Leshkevich, Jacqueline; Chiang, Vincent L. Plant Physiology, Vol. 128, Issue 2 https://doi.org/10.1104/pp.010603	journal	February 2002
Modifications in Lignin and Accumulation of Phenolic Glucosides in Poplar Xylem upon Down-regulation of Caffeoyl-Coenzyme A O-Methyltransferase, an Enzyme Involved in Lignin Biosynthesis Meyermans, Hugo; Morreel, Kris; Lapierre, Catherine Journal of Biological Chemistry, Vol. 275, Issue 47, p. 36899-36909 https://doi.org/10.1074/jbc.M006915200	journal	August 2000

Similar Records

Genome-Wide Association Study of Wood Anatomical and Morphological Traits in Populus trichocarpa

Journal Article · Wed Sep 09 00:00:00 EDT 2020 · Frontiers in Plant Science · OSTI ID:1254104

Chhetri, Hari B.; Furches, Anna; Macaya-Sanz, David; +8 more

Multitrait genome–wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits

Journal Article · Thu Mar 07 00:00:00 EST 2019 · New Phytologist · OSTI ID:1254104

Chhetri, Hari B.; Macaya‐Sanz, David; Kainer, David; +17 more

Molecular genetics of growth and development in Populus (Salicaceae). V. Mapping quantitative trait loci affecting leaf variation

Journal Article · Sat Feb 01 00:00:00 EST 1997 · American Journal of Botany · OSTI ID:1254104

Wu, R; Bradshaw, Jr, H D; Stettler, R F

Related Subjects

09 BIOMASS FUELS
59 BASIC BIOLOGICAL SCIENCES
association genetics
biofuels
black cottonwood
genotyping
lignin biosynthesis
linkage disequilibrium
resequencing
single nucleotide polymorphism (SNP)

Title: Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

Citation Formats

References (86)

Similar Records

Related Subjects