skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Biochemical Roles for Conserved Residues in the Bacterial Fatty Acid-binding Protein Family

Journal Article · · Journal of Biological Chemistry

Fatty acid kinase (Fak) is a ubiquitous Gram-positive bacterial enzyme consisting of an ATP-binding protein (FakA) that phosphorylates the fatty acid bound to FakB. In Staphylococcus aureus, Fak is a global regulator of virulence factor transcription and is essential for the activation of exogenous fatty acids for incorporation into phospholipids. The 1.2-Å x-ray structure of S. aureus FakB2, activity assays, solution studies, site-directed mutagenesis, and in vivo complementation were used to define the functions of the five conserved residues that define the FakB protein family (Pfam02645). The fatty acid tail is buried within the protein, and the exposed carboxyl group is bound by a Ser-93-fatty acid carboxyl-Thr-61-His-266 hydrogen bond network. The guanidinium of the invariant Arg-170 is positioned to potentially interact with a bound acylphosphate. The reduced thermal denaturation temperatures of the T61A, S93A, and H266A FakB2 mutants illustrate the importance of the hydrogen bond network in protein stability. The FakB2 T61A, S93A, and H266A mutants are 1000-fold less active in the Fak assay, and the R170A mutant is completely inactive. All FakB2 mutants form FakA(FakB2)2 complexes except FakB2(R202A), which is deficient in FakA binding. Allelic replacement shows that strains expressing FakB2 mutants are defective in fatty acid incorporation into phospholipids and virulence gene transcription. These conserved residues are likely to perform the same critical functions in all bacterial fatty acid-binding proteins.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
National Inst. of Health; Cancer Center Support; NIGMS; NIAID; American Lebanese Syrian Associated Charities
Grant/Contract Number:
GM034496; T32 AI106700; CA21765
OSTI ID:
1243114
Journal Information:
Journal of Biological Chemistry, Vol. 291, Issue 12; ISSN 0021-9258
Publisher:
American Society for Biochemistry and Molecular BiologyCopyright Statement
Country of Publication:
United States
Language:
ENGLISH
Citation Metrics:
Cited by: 18 works
Citation information provided by
Web of Science

References (31)

Measurement of the temperature of the resting rotor in analytical ultracentrifugation journal August 2014
Development and Validation of Real-Time Quantitative Reverse Transcriptase–Polymerase Chain Reaction for Monitoring Gene Expression in Cardiac Myocytesin Vitro journal May 1999
Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker journal March 2003
The Phenix software for automated determination of macromolecular structures journal September 2011
Genetic Tools To Enhance the Study of Gene Function and Regulation in Staphylococcus aureus journal January 2013
Perturbation of Staphylococcus aureus Gene Expression by the Enoyl-Acyl Carrier Protein Reductase Inhibitor AFN-1252 journal March 2013
Fatty acid kinase A is an important determinant of biofilm formation in Staphylococcus aureus USA300 journal October 2015
Clustal W and Clustal X version 2.0 journal September 2007
Incorporation of extracellular fatty acids by a fatty acid kinase-dependent pathway in S taphylococcus aureus : Fatty acid metabolism in journal March 2014
Structure of a fatty acid-binding protein from Bacillus subtilis determined by sulfur-SAD phasing using in-house chromium radiation journal April 2009
Coot model-building tools for molecular graphics journal November 2004
Structural and mechanistic insight into covalent substrate binding by Escherichia coli dihydroxyacetone kinase journal January 2011
The toxic shock syndrome exotoxin structural gene is not detectably transmitted by a prophage journal October 1983
Allelic replacement in Staphylococcus aureus with inducible counter-selection journal January 2006
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions journal November 2004
Lesions in Teichoic Acid Biosynthesis in Staphylococcus aureus Lead to a Lethal Gain of Function in the Otherwise Dispensable Pathway journal June 2006
Overview of Current Methods in Sedimentation Velocity and Sedimentation Equilibrium Analytical Ultracentrifugation journal February 2013
Identification of the Staphylococcus aureus vfrAB Operon, a Novel Virulence Factor Regulatory Locus journal February 2014
Allelic Exchange book January 2014
Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein journal January 2003
Global Multi-Method Analysis of Affinities and Cooperativity in Complex Systems of Macromolecular Interactions journal September 2012
NMRPipe: A multidimensional spectral processing system based on UNIX pipes journal November 1995
Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition journal March 2004
Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling journal March 2000
Evolutionary trace report_maker: a new type of service for comparative analysis of proteins journal April 2006
Identification of a two-component fatty acid kinase responsible for host fatty acid incorporation by Staphylococcus aureus journal July 2014
Crystal Structure of the Citrobacter freundii Dihydroxyacetone Kinase Reveals an Eight-stranded α-Helical Barrel ATP-binding Domain journal September 2003
EDD, a novel phosphotransferase domain common to mannose transporter EIIA, dihydroxyacetone kinase, and DegV journal February 2005
Recorded scan times can limit the accuracy of sedimentation coefficients in analytical ultracentrifugation journal June 2013
X-ray Structures of the Three Lactococcus lactis Dihydroxyacetone Kinase Subunits and of a Transient Intersubunit Complex journal October 2008
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997

Cited By (1)

A fatty acid-binding protein of Streptococcus pneumoniae facilitates the acquisition of host polyunsaturated fatty acids journal September 2019