skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Structures of potent anticancer compounds bound to tubulin

Journal Article · · Protein Science
DOI:https://doi.org/10.1002/pro.2704· OSTI ID:1226512
 [1];  [1];  [2];  [3]
  1. Department of Chemistry and Biochemistry University of California, Los Angeles Los Angeles California 90095
  2. Department of Chemistry and Biochemistry University of California, Los Angeles Los Angeles California 90095, Molecular Biology Institute, University of California Los Angeles Los Angeles California 90095, Department of Energy Institute for Genomics and Proteomics University of California Los Angeles Los Angeles California 90095
  3. Department of Chemistry and Biochemistry University of California, Los Angeles Los Angeles California 90095, Molecular Biology Institute, University of California Los Angeles Los Angeles California 90095, Jonsson Comprehensive Cancer Center University of California Los Angeles Los Angeles California 90095

Abstract Small molecules that bind to tubulin exert powerful effects on cell division and apoptosis (programmed cell death). Cell‐based high‐throughput screening combined with chemo/bioinformatic and biochemical analyses recently revealed a novel compound MI‐181 as a potent mitotic inhibitor with heightened activity towards melanomas. MI‐181 causes tubulin depolymerization, activates the spindle assembly checkpoint arresting cells in mitosis, and induces apoptotic cell death. C2 is an unrelated compound previously shown to have lethal effects on microtubules in tumorigenic cell lines. We report 2.60 Å and 3.75 Å resolution structures of MI‐181 and C2, respectively, bound to a ternary complex of αβ‐tubulin, the tubulin‐binding protein stathmin, and tubulin tyrosine ligase. In the first of these structures, our crystallographic results reveal a unique binding mode for MI‐181 extending unusually deep into the well‐studied colchicine‐binding site on β‐tubulin. In the second structure the C2 compound occupies the colchicine‐binding site on β‐tubulin with two chemical moieties recapitulating contacts made by colchicine, in combination with another system of atomic contacts. These insights reveal the source of the observed effects of MI‐181 and C2 on microtubules, mitosis, and cultured cancer cell lines. The structural details of the interaction between tubulin and the described compounds may guide the development of improved derivative compounds as therapeutic candidates or molecular probes to study cancer cell division.

Sponsoring Organization:
USDOE
Grant/Contract Number:
DE‐AC02–06CH11357
OSTI ID:
1226512
Alternate ID(s):
OSTI ID: 1295972
Journal Information:
Protein Science, Journal Name: Protein Science Vol. 24 Journal Issue: 7; ISSN 0961-8368
Publisher:
Wiley Blackwell (John Wiley & Sons)Copyright Statement
Country of Publication:
United Kingdom
Language:
English
Citation Metrics:
Cited by: 18 works
Citation information provided by
Web of Science

References (56)

Discovery of Cytotoxic Dolastatin 10 Analogues with N-Terminal Modifications journal December 2014
Identification of a Small Molecule That Induces Mitotic Arrest Using a Simplified High-Content Screening Assay and Data Analysis Method journal February 2006
Structural basis for the regulation of tubulin by vinblastine journal May 2005
Linking Crystallographic Model and Data Quality journal May 2012
Chemical dissection of the cell cycle: probes for cell biology and anti-cancer drug development journal October 2014
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading journal January 2009
Microtubules and resistance to tubulin-binding agents journal February 2010
Microtubules as a target for anticancer drugs journal April 2004
Mitosis-targeted anti-cancer therapies: where they stand journal October 2012
Developing novel C-4 analogues of pyrrole-based antitubulin agents: weak but critical hydrogen bonding in the colchicine site journal January 2013
The 4 Å X-Ray Structure of a Tubulin:Stathmin-like Domain Complex journal September 2000
Structural plasticity of tubulin assembly probed by vinca-domain ligands journal July 2012
Highly enantioselective synthesis and cellular evaluation of spirooxindoles inspired by natural products journal July 2010
Ligand identification using electron-density map correlations journal December 2006
PHENIX : building new software for automated crystallographic structure determination journal October 2002
electronic Ligand Builder and Optimization Workbench ( eLBOW ): a tool for ligand coordinate and restraint generation journal September 2009
The Novel Microtubule-Destabilizing Drug BAL27862 Binds to the Colchicine Site of Tubulin with Distinct Effects on Microtubule Organization journal April 2014
A new tubulin-binding site and pharmacophore for microtubule-destabilizing anticancer drugs journal August 2014
Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model journal June 1985
Tools for integrated sequence-structure analysis with UCSF Chimera journal July 2006
Microtubule-binding agents: a dynamic field of cancer therapeutics journal October 2010
Stathmin Family Proteins Display Specific Molecular and Tubulin Binding Properties journal February 2001
XDS journal January 2010
Geometric characteristics of hydrogen bonds involving sulfur atoms in proteins journal July 2009
UCSF Chimera?A visualization system for exploratory research and analysis journal January 2004
Dissecting cellular processes using small molecules: identification of colchicine-like, taxol-like and other small molecules that perturb mitosis journal April 2000
Diversity-oriented synthesis as a tool for identifying new modulators of mitosis journal January 2014
The Binding of Vinca Domain Agents to Tubulin: Structural and Biochemical Studies book January 2010
Phase I/IIa trial of the novel microtubule inhibitor BAL101553 in advanced solid tumors: Phase I completed. journal May 2014
Automated ligand fitting by core-fragment fitting and extension into density journal July 2006
RM1: A reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and I journal July 2006
Weak Nonbonded S···X (X = O, N, and S) Interactions in Proteins. Statistical and Theoretical Studies. journal July 2002
15 Å Resolution Model of the Monomeric Kinesin Motor, KIF1A journal January 2000
The contribution of αβ-tubulin curvature to microtubule dynamics journal November 2014
Molecular Mechanism of Action of Microtubule-Stabilizing Anticancer Agents journal January 2013
Variations in the colchicine-binding domain provide insight into the structural switch of tubulin journal August 2009
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
Coot model-building tools for molecular graphics journal November 2004
Identification of Simple Compounds with Microtubule-Binding Activity That Inhibit Cancer Cell Growth with High Potency journal November 2011
Structure of a kinesin–tubulin complex and implications for kinesin motility journal July 2013
A designed ankyrin repeat protein selected to bind to tubulin caps the microtubule plus end journal July 2012
Hydrogen-Bond Acceptor and Donor Properties of Divalent Sulfur ( Y -S- Z and R -S-H) journal August 1997
Studies on Lysogenesis i. journal January 1951
High Content Screening of Diverse Compound Libraries Identifies Potent Modulators of Tubulin Dynamics journal February 2014
Structural Basis of Microtubule Stabilization by Laulimalide and Peloruside A journal January 2014
A TOG:  -tubulin Complex Structure Reveals Conformation-Based Mechanisms for a Microtubule Polymerase journal August 2012
Refined structure of αβ-tubulin at 3.5 Å resolution 1 1Edited by I. A. Wilson journal November 2001
Structural insight into the inhibition of tubulin by vinca domain peptide ligands journal September 2008
Discovery of Novel 2-Aryl-4-benzoyl-imidazole (ABI-III) Analogues Targeting Tubulin Polymerization As Antiproliferative Agents journal August 2012
Hypervalent Nonbonded Interactions of a Divalent Sulfur Atom. Implications in Protein Architecture and the Functions journal June 2012
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion journal March 2006
Structural Model for Tubulin Recognition and Deformation by Kinesin-13 Microtubule Depolymerases journal March 2013
Structural basis of tubulin tyrosination by tubulin tyrosine ligase journal January 2013
Structure of the αβ tubulin dimer by electron crystallography journal January 1998
Insight into tubulin regulation from a complex with colchicine and a stathmin-like domain journal March 2004
Phaser crystallographic software journal July 2007