skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins

Journal Article · · Metabolic Engineering

Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1222407
Journal Information:
Metabolic Engineering, Journal Name: Metabolic Engineering Vol. 26 Journal Issue: C; ISSN 1096-7176
Publisher:
ElsevierCopyright Statement
Country of Publication:
Belgium
Language:
English
Citation Metrics:
Cited by: 35 works
Citation information provided by
Web of Science

References (38)

A Computational Tool to Detect and Avoid Redundancy in Selected Reaction Monitoring journal August 2012
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation journal December 2006
Informing Biological Design by Integration of Systems and Synthetic Biology journal March 2011
A database of mass spectrometric assays for the yeast proteome journal November 2008
Application of targeted proteomics to metabolically engineered Escherichia coli journal April 2012
Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute journal January 2008
Panorama: A Targeted Proteomics Knowledge Base journal July 2014
Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions journal May 2012
Fast high performance liquid chromatography separations for proteomic applications using Fused-Core? silica particles journal March 2012
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma journal June 2009
Modular Engineering of l-Tyrosine Production in Escherichia coli journal October 2011
Protein abundance profiling of the Escherichia coli cytosol journal January 2008
j5 DNA Assembly Design Automation Software journal December 2011
mProphet: automated data processing and statistical validation for large-scale SRM experiments journal March 2011
Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides journal July 2005
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes journal December 2009
Programming cells by multiplex genome engineering and accelerated evolution journal July 2009
Automated Workflow for Large-Scale Selected Reaction Monitoring Experiments journal February 2012
Innovation at the intersection of synthetic and systems biology journal October 2012
A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids journal April 1984
Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production journal September 2013
Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification journal June 2012
The importance of the digest: Proteolysis and absolute quantification in proteomics journal August 2011
Culture Medium for Enterobacteria journal January 1974
From the first drop to the first truckload: commercialization of microbial processes for renewable chemicals journal December 2013
Tools for genome-wide strain design and construction journal October 2012
Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins journal May 2012
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis journal January 2013
Comprehensive quantitative analysis of central carbon and amino‐acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics journal January 2011
Addgene provides an open forum for plasmid sharing journal April 2012
Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast journal January 2012
Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides journal July 2010
Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy journal June 2011
PASSEL: The PeptideAtlas SRMexperiment library journal April 2012
Targeted proteomics for metabolic pathway optimization: Application to terpene production journal March 2011
Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics journal August 2009
Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes journal August 2006
Precise and reliable gene expression via standard transcription and translation initiation elements journal March 2013

Similar Records

A less laborious approach to the high-throughput production of recombinant proteins in Escherichia coli using 2-liter plastic beverage bottles.
Journal Article · Sun Jun 01 00:00:00 EDT 2003 · Protein Expr. Purif. · OSTI ID:1222407

Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments
Journal Article · Tue Jun 28 00:00:00 EDT 2016 · PLoS Computational Biology (Online) · OSTI ID:1222407

High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440
Journal Article · Wed Dec 02 00:00:00 EST 2020 · Frontiers in Bioengineering and Biotechnology · OSTI ID:1222407

Related Subjects