Draft Genome Sequence of Neurospora crassa Strain FGSC 73

Baker, Scott E.; Schackwitz, Wendy; Lipzen, Anna; Martin, Joel; Haridas, Sajeet; LaButti, Kurt; Grigoriev, Igor V.; Simmons, Blake A.; McCluskey, Kevin

doi:10.1128/genomeA.00074-15

Title: Draft Genome Sequence of Neurospora crassa Strain FGSC 73

Journal Article · Thu Apr 02 00:00:00 EDT 2015 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.00074-15· OSTI ID:1214769

^[1]; Schackwitz, Wendy ^[2]; Lipzen, Anna ^[2]; Martin, Joel ^[2]; Haridas, Sajeet ^[2]; LaButti, Kurt ^[2]; Grigoriev, Igor V. ^[2]; Simmons, Blake A. ^[3]; McCluskey, Kevin ^[4]

DOE Joint BioEnergy Institute, Emeryville, CA (United States); Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab. (EMSL)
DOE Joint BioEnergy Institute, Emeryville, CA (United States); Sandia National Lab. (SNL-CA), Livermore, CA (United States)
Kansas State Univ., Manhattan, KS (United States). Fungal Genetics Stock Center

We report the elucidation of the complete genome of the Neurospora crassa (Shear and Dodge) strain FGSC 73, a mat-a, trp-3 mutant strain. The genome sequence around the idiotypic mating type locus represents the only publicly available sequence for a mat-a strain. 40.42 Megabases are assembled into 358 scaffolds carrying 11,978 gene models.

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Research Organization:: Sandia National Laboratories (SNL), Albuquerque, NM, and Livermore, CA (United States); Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Genomics Division

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)

Grant/Contract Number:: AC04-94AL85000; AC05-76RL01830; AC02-05CH11231

OSTI ID:: 1214769

Alternate ID(s):: OSTI ID: 1214773; OSTI ID: 1215421; OSTI ID: 1221650; OSTI ID: 1242699

Report Number(s):: LBNL-177815

Journal Information:: Genome Announcements, Vol. 3, Issue 2; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (9)

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Bulk Segregant Analysis Followed by High-Throughput Sequencing Reveals the Neurospora Cell Cycle Gene, ndc-1 , To Be Allelic with the Gene for Ornithine Decarboxylase, spe-1 Pomraning, Kyle R.; Smith, Kristina M.; Freitag, Michael Eukaryotic Cell, Vol. 10, Issue 6 https://doi.org/10.1128/EC.00016-11	journal	April 2011
Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa McCluskey, Kevin; Wiest, Aric E.; Grigoriev, Igor V. G3: Genes\|Genomes\|Genetics, Vol. 1, Issue 4 https://doi.org/10.1534/g3.111.000307	journal	September 2011
Selection to sequence: opportunities in fungal genomics Baker, Scott E. Environmental Microbiology, Vol. 11, Issue 12 https://doi.org/10.1111/j.1462-2920.2009.02112.x	journal	December 2009
Molecular analysis of intragenic recombination at the tryptophan synthetase locus in Neurospora crassa Wiest, A.; Barchers, D.; Eaton, M. Journal of Genetics, Vol. 92, Issue 3 https://doi.org/10.1007/s12041-013-0305-4	journal	December 2013

Cited By (3)

Diverse data supports the transition of filamentous fungal model organisms into the post-genomics era McCluskey, Kevin; Baker, Scott E. Mycology, Vol. 8, Issue 2 https://doi.org/10.1080/21501203.2017.1281849	journal	January 2017
OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes Testa, Alison C.; Oliver, Richard P.; Hane, James K. Genome Biology and Evolution, Vol. 8, Issue 6 https://doi.org/10.1093/gbe/evw121	journal	June 2016
Evolution and functional characterization of pectate lyase PEL12, a member of a highly expanded Clonostachys rosea polysaccharide lyase 1 family Atanasova, Lea; Dubey, Mukesh; Grujić, Marica BMC Microbiology, Vol. 18, Issue 1 https://doi.org/10.1186/s12866-018-1310-9	journal	November 2018

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