Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

Hwang, C.; Copeland, A.; Lucas, Susan; Lapidus, Alla; Barry, Kerrie W.; Glavina del Rio, T.; Dalin, Eileen; Tice, Hope; Pitluck, S.; Sims, David R.; Brettin, T.; Bruce, David; Detter, J. C.; Han, Cliff F.; Schmutz, Jeremy; Larimer, F.; Land, M.; Hauser, L.; Kyrpides, Nikos C.; Lykidis, Athanasios; Richardson, P. M.; Beliaev, Alex S.; Sanford, Robert A.; Loeffler, Frank E.; Fields, Matthew W.

doi:10.1128/genomeA.01449-14

Title: Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

Journal Article · Thu Jan 22 00:00:00 EST 2015 · Journal of Bacteriology, 3(1):Article No. e01449-14

DOI:https://doi.org/10.1128/genomeA.01449-14· OSTI ID:1184919

Hwang, C. ^[1]; Copeland, A. ^[2]; Lucas, Susan ^[2]; Lapidus, Alla ^[3]; Barry, Kerrie W. ^[2]; Glavina del Rio, T. ^[2]; Dalin, Eileen ^[4]; Tice, Hope ^[2]; Pitluck, S. ^[2]; Sims, David R. ^[5]; Brettin, T. ^[2]; Bruce, David; Detter, J. C.; Han, Cliff F.; Schmutz, Jeremy; Larimer, F.; Land, M.; Hauser, L.; Kyrpides, Nikos C.; Lykidis, Athanasios more »

Montana State Univ., Bozeman, MT (United States).Center for Biofiolm Engineering
DOE Joint Genome Institute, Walnut Creek, CA (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States); St. Petersburg Academic University, St. Petersburg (Russia). Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg, Russian Federation, and Algorithmic Biology Lab.
DOE Joint Genome Institute, Walnut Creek, CA (United States); Synthetic Genomics, La Jolla, CA (United States)
DOE Joint Genome Institute, Walnut Creek, CA (United States); HudsonAlpha Institute for Biotechnology, Huntsville, AL (United States). Genome Sequencing Center
Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Division

Here, we report the genome sequence of Anaeromyxobacter sp. Fw109-5, isolated from nitrate- and uranium-contaminated subsurface sediment of the Oak Ridge Integrated Field-Scale Subsurface Research Challenge (IFC) site, Oak Ridge Reservation, TN. The bacterium’s genome sequence will elucidate its physiological potential in subsurface sediments undergoing in situ uranium bioremediation and natural attenuation.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); Work for Others (WFO)

Grant/Contract Number:: AC05-76RL01830; AC02-05CH11231; AC05-00OR22725

OSTI ID:: 1184919

Alternate ID(s):: OSTI ID: 1215522; OSTI ID: 1265321; OSTI ID: 1327767

Report Number(s):: PNNL-SA-107352; KP1702030

Journal Information:: Journal of Bacteriology, 3(1):Article No. e01449-14, Vol. 3, Issue 1

Country of Publication:: United States

Language:: English

References (12)

In Situ Bioreduction of Uranium (VI) to Submicromolar Levels and Reoxidation by Dissolved Oxygen Wu, Wei-Min; Carley, Jack; Luo, Jian Environmental Science & Technology, Vol. 41, Issue 16 https://doi.org/10.1021/es062657b	journal	August 2007
Diversity and Distribution of Anaeromyxobacter Strains in a Uranium-Contaminated Subsurface Environment with a Nonuniform Groundwater Flow Thomas, S. H.; Padilla-Crespo, E.; Jardine, P. M. Applied and Environmental Microbiology, Vol. 75, Issue 11 https://doi.org/10.1128/AEM.02473-08	journal	April 2009
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia Nature Methods, Vol. 7, Issue 6 https://doi.org/10.1038/nmeth.1457	journal	May 2010
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions Markowitz, V. M.; Szeto, E.; Palaniappan, K. Nucleic Acids Research, Vol. 36, Issue Database https://doi.org/10.1093/nar/gkm846	journal	December 2007
Characterization and Description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an Aryl-Halorespiring Facultative Anaerobic Myxobacterium Sanford, R. A.; Cole, J. R.; Tiedje, J. M. Applied and Environmental Microbiology, Vol. 68, Issue 2 https://doi.org/10.1128/AEM.68.2.893-900.2002	journal	February 2002
Characterization of Fe(III) Reduction by Chlororespiring Anaeromxyobacter dehalogenans He, Q.; Sanford, R. A. Applied and Environmental Microbiology, Vol. 69, Issue 5 https://doi.org/10.1128/AEM.69.5.2712-2718.2003	journal	May 2003
Strain FAc12, a dissimilatory iron-reducing member of the Anaeromyxobacter subgroup of Myxococcales Treude, Nicole; Rosencrantz, Dirk; Liesack, Werner FEMS Microbiology Ecology, Vol. 44, Issue 2 https://doi.org/10.1016/S0168-6496(03)00048-5	journal	May 2003
Uranium(VI) Reduction by Anaeromyxobacter dehalogenans Strain 2CP-C Wu, Q.; Sanford, R. A.; Loffler, F. E. Applied and Environmental Microbiology, Vol. 72, Issue 5 https://doi.org/10.1128/AEM.72.5.3608-3614.2006	journal	May 2006
Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C Marshall, Matthew J.; Dohnalkova, Alice C.; Kennedy, David W. Environmental Microbiology, Vol. 11, Issue 2 https://doi.org/10.1111/j.1462-2920.2008.01795.x	journal	February 2009
Release of Arsenic from Soil by a Novel Dissimilatory Arsenate-Reducing Bacterium, Anaeromyxobacter sp. Strain PSR-1 Kudo, Keitaro; Yamaguchi, Noriko; Makino, Tomoyuki Applied and Environmental Microbiology, Vol. 79, Issue 15 https://doi.org/10.1128/AEM.00693-13	journal	May 2013
Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils Sanford, R. A.; Wagner, D. D.; Wu, Q. Proceedings of the National Academy of Sciences, Vol. 109, Issue 48 https://doi.org/10.1073/pnas.1211238109	journal	November 2012

Cited By (1)

Bioremediation through microbes: systems biology and metabolic engineering approach Dangi, Arun Kumar; Sharma, Babita; Hill, Russell T. Critical Reviews in Biotechnology, Vol. 39, Issue 1 https://doi.org/10.1080/07388551.2018.1500997	journal	September 2018

Similar Records

Complete genome sequence of Cellulomonas sp., strain ES6, a chromate-reducing bacterium isolated from chromium-contaminated subsurface sediment

Journal Article · Thu Oct 19 00:00:00 EDT 2023 · Microbiology Resource Announcements · OSTI ID:1184919

Perea, Katheryn R.; DeVeaux, Linda C.; Lee, Brady D.; +2 more

Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium

Journal Article · Thu Apr 04 00:00:00 EDT 2019 · Microbiology Resource Announcements · OSTI ID:1184919

Brzoska, Ryann M.; Huntemann, Marcel; Clum, Alicia; +14 more

Complete Genome Sequence of Bacillus cereus Strain CPT56D-587-MTF, Isolated from a Nitrate- and Metal-Contaminated Subsurface Environment

Journal Article · Thu May 19 00:00:00 EDT 2022 · Microbiology Resource Announcements · OSTI ID:1184919

Goff, Jennifer L.; Lui, Lauren M.; Nielsen, Torben N.; +9 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE WASTES FROM NUCLEAR FACILITIES
genome sequence
anaeromyxobacter
anaerobic
metal-reducing bacterium
54 ENVIRONMENTAL SCIENCES
Fw109-5
Metal-Reducing

Title: Complete genome sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

Citation Formats

References (12)

Cited By (1)

Similar Records

Related Subjects