Chromalveolate plastids: direct descent or multiple endosymbioses?
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journal
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March 2009 |
Crystal Structure of the Nitrogenase-like Dark Operative Protochlorophyllide Oxidoreductase Catalytic Complex (ChlN/ChlB) 2
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journal
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June 2010 |
A Molecular Timeline for the Origin of Photosynthetic Eukaryotes
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journal
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May 2004 |
A prokaryotic origin for light-dependent chlorophyll biosynthesis of plants.
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journal
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April 1995 |
Reconstitution of Light-independent Protochlorophyllide Reductase from Purified Bchl and BchN-BchB Subunits
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journal
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May 2000 |
A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach
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journal
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May 2001 |
Dinoflagellates: a remarkable evolutionary experiment
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journal
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October 2004 |
Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO 1
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journal
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December 2007 |
Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms
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journal
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June 2009 |
Photoactive pigment—enzyme complexes of chlorophyll precursor in plant leaves
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journal
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December 2007 |
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
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journal
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August 2006 |
ANALYSIS OF ALEXANDRIUM TAMARENSE (DINOPHYCEAE) GENES REVEALS THE COMPLEX EVOLUTIONARY HISTORY OF A MICROBIAL EUKARYOTE 1 : HORIZONTAL GENE TRANSFER IN DINOFLAGELLATES
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journal
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June 2012 |
Assessing the bacterial contribution to the plastid proteome
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journal
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December 2013 |
The Cryptomonad Nucleomorph: its Ultrastructure and Evolutionary Significance1
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journal
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December 1980 |
Cryogenic and Laser Photoexcitation Studies Identify Multiple Roles for Active Site Residues in the Light-driven Enzyme Protochlorophyllide Oxidoreductase
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journal
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May 2009 |
Data from: Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae [Supplemental Data]
- Hunsperger, H. M.; Randhawa, T.; Cattolico, R. A.
-
Dryad Digital Repository, 1 txt file (88.21 Kb), 1 txt file (55.24 Kb), 1 txt file (17 Kb), 1 Excel file (44.48 Kb), 1 Excel file (12.66 Kb)
https://doi.org/10.5061/dryad.3ss6p
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dataset
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March 2015 |
A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer
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journal
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January 2007 |
Horizontal gene transfer among genomes: The complexity hypothesis
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journal
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March 1999 |
A light-dependent complementation system for analysis of NADPH:protochlorophyllide oxidoreductase: identification and mutagenesis of two conserved residues that are essential for enzyme activity.
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journal
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January 1995 |
ProtTest: selection of best-fit models of protein evolution
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journal
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January 2005 |
Chlorophyll c–Containing Plastid Relationships Based on Analyses of a Multigene Data Set with All Four Chromalveolate Lineages
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journal
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May 2005 |
An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum
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journal
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November 2009 |
Protochlorophyllide Reduction: Mechanisms and Evolution¶
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journal
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January 2003 |
Oxygen Sensitivity of a Nitrogenase-like Protochlorophyllide Reductase from the Cyanobacterium Leptolyngbya boryana
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journal
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July 2009 |
A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids
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journal
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June 2010 |
How big is the iceberg of which organellar genes in nuclear genomes are but the tip?
- Doolittle, W. F.; Boucher, Y.; NesbØ, C. L.
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Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, Vol. 358, Issue 1429
https://doi.org/10.1098/rstb.2002.1185
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journal
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January 2003 |
The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids
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journal
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December 2008 |
Re-evaluating the Green versus Red Signal in Eukaryotes with Secondary Plastid of Red Algal Origin
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journal
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January 2012 |
A Time line of the Environmental Genetics of the Haptophytes
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journal
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September 2009 |
NB-protein (BchN-BchB) of dark-operative protochlorophyllide reductase is the catalytic component containing oxygen-tolerant Fe-S clusters
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journal
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March 2008 |
The evolution of photosynthesis in chromist algae through serial endosymbioses
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journal
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December 2014 |
Phylogenomic Analysis of “Red” Genes from Two Divergent Species of the “Green” Secondary Phototrophs, the Chlorarachniophytes, Suggests Multiple Horizontal Gene Transfers from the Red Lineage before the Divergence of Extant Chlorarachniophytes
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journal
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June 2014 |
Horizontal Gene Transfer and Redundancy of Tryptophan Biosynthetic Enzymes in Dinotoms
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journal
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January 2014 |
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
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journal
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September 2002 |
Do Plastid-Related Characters Support the Chromalveolate Hypothesis?1: Chromalveolate Hypothesis
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journal
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June 2005 |
Evolutionary Dynamics of Light-Independent Protochlorophyllide Oxidoreductase Genes in the Secondary Plastids of Cryptophyte Algae
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journal
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January 2008 |
High Expression Hampers Horizontal Gene Transfer
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journal
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January 2012 |
A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES 1
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journal
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October 2008 |
A Tertiary Plastid Uses Genes from Two Endosymbionts
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journal
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April 2006 |
Dynamic model of phytoplankton growth and acclimation:responses of the balanced growth rate and the chlorophyll a:carbon ratio to light, nutrient-limitation and temperature
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journal
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January 1997 |
MrBayes 3: Bayesian phylogenetic inference under mixed models
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journal
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August 2003 |
The light intensity dependence of protochlorophyllide photoconversion and its significance to the catalytic mechanism of protochlorophyllide reductase
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journal
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December 1996 |
A Plastid in the Making: Evidence for a Second Primary Endosymbiosis
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journal
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December 2005 |
Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra
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journal
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June 2006 |
The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer
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journal
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December 2010 |
Flavodoxin Expression as an Indicator of iron Limitation in Marine Diatoms1
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journal
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August 1995 |
A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer
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text
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January 2007 |
Differential Operation of Dual Protochlorophyllide Reductases for Chlorophyll Biosynthesis in Response to Environmental Oxygen Levels in the Cyanobacterium Leptolyngbya boryana
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journal
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October 2006 |
Tyr275 and Lys279 Stabilize NADPH within the Catalytic Site of NADPH:Protochlorophyllide Oxidoreductase and Are Involved in the Formation of the Enzyme Photoactive State †
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journal
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October 2001 |
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
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journal
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July 2010 |
Reevaluating the Green Contribution to Diatom Genomes
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journal
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January 2012 |
Prediction of complete gene structures in human genomic DNA
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journal
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April 1997 |
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
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journal
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June 2014 |
Behavioral and Physiological Changes during Benthic-Pelagic Transition in the Harmful Alga, Heterosigma akashiwo: Potential for Rapid Bloom Formation
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journal
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October 2013 |
Monophyly of Primary Photosynthetic Eukaryotes: Green Plants, Red Algae, and Glaucophytes
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journal
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July 2005 |
Chlorophyll Biosynthesis Gene Evolution Indicates Photosystem Gene Duplication, Not Photosystem Merger, at the Origin of Oxygenic Photosynthesis
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journal
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December 2012 |
The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles
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journal
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January 2014 |
Genome-wide identification and expression analysis of the plant specific LIM genes in Gossypium arboreum under phytohormone, salt and pathogen stress
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journal
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April 2021 |
Horizontal Gene Transfer is a Significant Driver of Gene Innovation in Dinoflagellates
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journal
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November 2013 |
An efficient and economic enhancer mix for PCR
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journal
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September 2006 |
Supermatrix Data Highlight the Phylogenetic Relationships of Photosynthetic Stramenopiles
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journal
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March 2012 |
Phylogenetic relationships of the ‘golden algae’ (haptophytes, heterokont chromophytes) and their plastids
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book
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January 1997 |
The genomics of symbiosis: Hosts keep the baby and the bath water
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journal
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September 2002 |
Comment on “Catalytic Efficiency of a Photoenzyme-An Adaptation to Natural Light Conditions” by J. Popp et al.
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journal
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May 2013 |
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
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text
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January 2014 |
Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata
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journal
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January 2010 |
Medium- and short-chain dehydrogenase/reductase gene and protein families: Medium-chain and short-chain dehydrogenases/reductases in retinoid metabolism
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journal
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November 2008 |
After the primary endosymbiosis: an update on the chromalveolate hypothesis and the origins of algae with Chl c
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journal
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July 2010 |
Nonlinear partial differential equations and applications: From the Cover: The single, ancient origin of chromist plastids
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journal
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November 2002 |
Acclimation of photosynthesis to irradiance and spectral quality in British plant species: chlorophyll content, photosynthetic capacity and habitat preference
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journal
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April 1997 |
A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
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journal
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April 2006 |
The Isolation and Spectral Absorption Properties of Protochlorophyll from Etiolated Barley Seedlings
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journal
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November 1948 |
Response to the Comments by L. O. Björn on our Paper “Catalytic Efficiency of a Photoenzyme-An Adaptation to Natural Light Conditions”
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journal
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May 2013 |
Chromera velia, Endosymbioses and the Rhodoplex Hypothesis—Plastid Evolution in Cryptophytes, Alveolates, Stramenopiles, and Haptophytes (CASH Lineages)
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journal
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February 2014 |
Evolution and Functional Diversification of Fructose Bisphosphate Aldolase Genes in Photosynthetic Marine Diatoms
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journal
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September 2011 |
Lotharella reticulosa sp. nov.: A Highly Reticulated Network Forming Chlorarachniophyte from the Mediterranean Sea
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journal
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January 2012 |
Secondary structure of NADPH: protochlorophyllide oxidoreductase examined by circular dichroism and prediction methods*
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journal
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July 1996 |
Medium- and short-chain dehydrogenase/reductase gene and protein families: The SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes
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journal
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November 2008 |
Nitrogenase Fe protein-like Fe-S cluster is conserved in L-protein (BchL) of dark-operative protochlorophyllide reductase from Rhodobacter capsulatus
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journal
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October 2006 |
Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids
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journal
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August 2007 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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journal
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March 2004 |
Oceanographic and Biogeochemical Insights from Diatom Genomes
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journal
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January 2010 |
The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts
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journal
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September 2006 |
Cloning of the Gene Encoding a Protochlorophyllide Reductase: the Physiological Significance of the Co-Existence of Light-Dependent and -Independent Protochlorophyllide Reduction Systems in the Cyanobacterium Plectonema boryanum
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journal
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February 1998 |
Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids
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journal
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January 2009 |
Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles
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journal
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March 2010 |
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
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journal
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November 2012 |
Heterotachy Processes in Rhodophyte-Derived Secondhand Plastid Genes: Implications for Addressing the Origin and Evolution of Dinoflagellate Plastids
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journal
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May 2006 |
Plastid Genome Sequence of the Cryptophyte Alga Rhodomonas salina CCMP1319: Lateral Transfer of Putative DNA Replication Machinery and a Test of Chromist Plastid Phylogeny
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journal
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April 2007 |
The origin of red algae: Implications for plastid evolution
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journal
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April 1997 |
Gene Transfer: Gene Swapping Craze Reaches Eukaryotes
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journal
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January 2003 |
X-ray crystal structure of the light-independent protochlorophyllide reductase
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journal
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May 2010 |
Molecular Mechanisms of Photosynthesis
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book
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December 2002 |
Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria: A genuine LPOR in anoxygenic phototrophic bacteria
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journal
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August 2014 |
The Pinguiophyceae classis nova, a new class of photosynthetic stramenopiles whose members produce large amounts of omega-3 fatty acids
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journal
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March 2002 |
Making light work of enzyme catalysis: protochlorophyllide oxidoreductase
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journal
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November 2005 |
Why some clades have low bootstrap frequencies and high Bayesian posterior probabilities
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journal
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May 2014 |
Green-colored Plastids in the Dinoflagellate Genus Lepidodinium are of Core Chlorophyte Origin
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journal
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April 2011 |
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
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journal
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September 2006 |
Protochlorophyllide Reduction: Mechanisms and Evolution¶
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journal
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December 2003 |
Induction of Specific Proteins in Eukaryotic Algae Grown Under Iron-, Phosphorus-, or Nitrogen-Deficient Conditions1
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journal
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December 1993 |
Catalytic Efficiency of a Photoenzyme-An Adaptation to Natural Light Conditions
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journal
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April 2012 |
Genomic evidence for two functionally distinct gene classes
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journal
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May 1998 |
Greening in the dark: light-independent chlorophyll biosynthesis from anoxygenic photosynthetic bacteria to gymnosperms
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journal
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May 1998 |
A “Green” Phosphoribulokinase in Complex Algae with Red Plastids: Evidence for a Single Secondary Endosymbiosis Leading to Haptophytes, Cryptophytes, Heterokonts, and Dinoflagellates
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journal
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February 2006 |
Iron-Induced Changes in Light Harvesting and Photochemical Energy Conversion Processes in Eukaryotic Marine Algae
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journal
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October 1992 |
Ancient Recruitment by Chromists of Green Algal Genes Encoding Enzymes for Carotenoid Biosynthesis
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journal
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August 2008 |
Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia
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journal
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January 2011 |
Are Red Algae Plants? A Critical Evaluation of Three Key Molecular Data Sets
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journal
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June 2001 |
Analyses of the Complete Chloroplast Genome Sequences of two Members of the Pelagophyceae: Aureococcus Anophagefferens Ccmp1984 and Aureoumbra Lagunensis Ccmp15071: Analyses of the Complete Chloroplast
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journal
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April 2010 |
Evolution by gene duplication: an update
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journal
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June 2003 |
The eukaryotic tree of life: endosymbiosis takes its TOL
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journal
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May 2008 |
Molecular and Photosynthetic Responses to Prolonged Darkness and Subsequent Acclimation to Re-Illumination in the Diatom Phaeodactylum tricornutum
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journal
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March 2013 |
You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
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journal
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December 1998 |
Cryptomonad Nucleomorph: its Ultrastructure and Evolutionary Significance
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journal
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December 1980 |
Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics
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journal
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August 2006 |
Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
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journal
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May 2003 |
The Light-Independent Protochlorophyllide Reductase: A Nitrogenase-Like Enzyme Catalyzing a Key Reaction for Greening in the Dark
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book
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January 2003 |
A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
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journal
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August 2002 |
Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants
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journal
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February 2012 |
Computational Inference of Homologous Gene Structures in the Human Genome
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journal
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May 2001 |
Site-directed mutagenesis of Tyr-189 and Lys-193 in NADPH: protochlorophyllide oxidoreductase from Synechocystis
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journal
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August 2002 |
HETEROSIGMA AKASHIWO (RAPHIDOPHYCEAE) RESTING CELL FORMATION IN BATCH CULTURE: STRAIN IDENTITY VERSUS PHYSIOLOGICAL RESPONSE 1 , 2
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journal
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April 2002 |
Mutagenesis Alters the Catalytic Mechanism of the Light-driven Enzyme Protochlorophyllide Oxidoreductase
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journal
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October 2009 |
Continued evolutionary surprises among dinoflagellates
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journal
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August 2002 |