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Title: Elimination of hydrogenase active site assembly blocks H2 production and increases ethanol yield in Clostridium thermocellum

Journal Article · · Biotechnology for Biofuels
 [1];  [2];  [2];  [2];  [1]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Biosciences Div. and BioEnergy Science Center
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center; Dartmouth College, Hanover, NH (United States). Thayer School of Engineering

Background: The native ability of Clostridium thermocellum to rapidly consume cellulose and produce ethanol makes it a leading candidate for a consolidated bioprocessing (CBP) biofuel production strategy. C. thermocellum also synthesizes lactate, formate, acetate, H-2, and amino acids that compete with ethanol production for carbon and electrons. Elimination of H-2 production could redirect carbon flux towards ethanol production by making more electrons available for acetyl coenzyme A reduction to ethanol. Results: H-2 production in C. thermocellum is encoded by four hydrogenases. Rather than delete each individually, we targeted hydrogenase maturase gene hydG, involved in converting the three [FeFe] hydrogenase apoenzymes into holoenzymes. Further deletion of the [NiFe] hydrogenase (ech) resulted in a mutant that functionally lacks all four hydrogenases. H-2 production in ΔhydGΔech was undetectable, and the ethanol yield nearly doubled to 64% of the maximum theoretical yield. Genomic analysis of ΔhydG revealed a mutation in adhE, resulting in a strain with both NADH- and NADPH-dependent alcohol dehydrogenase activities. While this same adhE mutation was found in ethanol-tolerant C. thermocellum strain E50C, ΔhydG and ΔhydGΔech are not more ethanol tolerant than the wild type, illustrating the complicated interactions between redox balancing and ethanol tolerance in C. thermocellum. Conclusions: Finally, the dramatic increase in ethanol production suggests that targeting protein post-translational modification is a promising new approach for simultaneous inactivation of multiple enzymes.

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center (BESC)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1185431
Alternate ID(s):
OSTI ID: 1327623
Journal Information:
Biotechnology for Biofuels, Vol. 8, Issue 1; ISSN 1754-6834
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 82 works
Citation information provided by
Web of Science

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Cited By (32)

Metabolic engineering strategies for consolidated production of lactic acid from lignocellulosic biomass journal January 2020
Enhanced ethanol production from lignocellulosic hydrolysates by inhibiting the hydrogen synthesis in Thermoanaerobacterium aotearoense SCUT27(Δ ldh ) journal July 2019
Rex in Caldicellulosiruptor bescii : Novel regulon members and its effect on the production of ethanol and overflow metabolites journal April 2018
Engineering Clostridium for improved solvent production: recent progress and perspective journal May 2019
Elimination of formate production in Clostridium thermocellum journal July 2015
Improvement of butanol production in Clostridium acetobutylicum through enhancement of NAD(P)H availability journal August 2018
Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides journal December 2016
Fuelling the future: microbial engineering for the production of sustainable biofuels journal March 2016
Diverse hydrogen production and consumption pathways influence methane production in ruminants journal June 2019
A mutation in the AdhE alcohol dehydrogenase of Clostridium thermocellum increases tolerance to several primary alcohols, including isobutanol, n-butanol and ethanol journal February 2019
Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells journal February 2017
Engineering microbes for direct fermentation of cellulose to bioethanol journal February 2018
CRISPR interference (CRISPRi) as transcriptional repression tool for Hungateiclostridium thermocellum DSM 1313 journal August 2019
Deletion of nfnAB in Thermoanaerobacterium saccharolyticum and Its Effect on Metabolism journal June 2015
Genetic engineering of Clostridium thermocellum DSM1313 for enhanced ethanol production journal May 2016
Enhanced ethanol formation by Clostridium thermocellum via pyruvate decarboxylase journal October 2017
Combining free and aggregated cellulolytic systems in the cellulosome-producing bacterium Ruminiclostridium cellulolyticum journal August 2015
Cellulosic ethanol production via consolidated bioprocessing at 75 °C by engineered Caldicellulosiruptor bescii journal October 2015
Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation journal December 2015
Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum journal June 2016
Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome journal September 2016
Expression of a heat-stable NADPH-dependent alcohol dehydrogenase from Thermoanaerobacter pseudethanolicus 39E in Clostridium thermocellum 1313 results in increased hydroxymethylfurfural resistance journal March 2017
Development of a core Clostridium thermocellum kinetic metabolic model consistent with multiple genetic perturbations journal May 2017
Expression of adhA from different organisms in Clostridium thermocellum journal November 2017
Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics journal April 2018
The diversity of hydrogen-producing bacteria and methanogens within an in situ coal seam journal September 2018
Metabolic and evolutionary responses of Clostridium thermocellum to genetic interventions aimed at improving ethanol production journal March 2020
The significance of aspartate on NAD(H) biosynthesis and ABE fermentation in Clostridium acetobutylicum ATCC 824 journal September 2019
Challenges and Advances for Genetic Engineering of Non-model Bacteria and Uses in Consolidated Bioprocessing journal October 2017
Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD+ (Rnf) as Electron Acceptors: A Historical Review journal March 2018
Promiscuous plasmid replication in thermophiles: Use of a novel hyperthermophilic replicon for genetic manipulation of Clostridium thermocellum at its optimum growth temperature journal December 2016
Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum journal February 2017